Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3154

Experiment: Ying_all64 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3153 and GFF3154 are separated by 164 nucleotidesGFF3154 and GFF3155 are separated by 230 nucleotides GFF3153 - Conjugative transfer transglycosylase, at 30,026 to 30,559 GFF3153 GFF3154 - hypothetical protein, at 30,724 to 31,221 GFF3154 GFF3155 - hypothetical protein, at 31,452 to 32,297 GFF3155 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1at 30.132 kb on + strand, within GFF3153at 30.133 kb on - strand, within GFF3153at 30.147 kb on + strand, within GFF3153at 30.147 kb on + strand, within GFF3153at 30.147 kb on + strand, within GFF3153at 30.148 kb on - strand, within GFF3153at 30.148 kb on - strand, within GFF3153at 30.148 kb on - strand, within GFF3153at 30.204 kb on + strand, within GFF3153at 30.204 kb on + strand, within GFF3153at 30.204 kb on + strand, within GFF3153at 30.204 kb on + strand, within GFF3153at 30.205 kb on - strand, within GFF3153at 30.205 kb on - strand, within GFF3153at 30.205 kb on - strand, within GFF3153at 30.205 kb on - strand, within GFF3153at 30.448 kb on - strand, within GFF3153at 30.623 kb on + strandat 30.624 kb on - strandat 30.725 kb on + strandat 30.726 kb on - strandat 30.774 kb on + strand, within GFF3154at 30.774 kb on + strand, within GFF3154at 30.774 kb on + strand, within GFF3154at 30.775 kb on - strand, within GFF3154at 30.775 kb on - strand, within GFF3154at 31.109 kb on + strand, within GFF3154at 31.110 kb on - strand, within GFF3154at 31.281 kb on + strandat 31.282 kb on - strandat 31.394 kb on - strandat 31.394 kb on - strandat 31.695 kb on + strand, within GFF3155at 31.695 kb on + strand, within GFF3155at 31.696 kb on - strand, within GFF3155at 31.696 kb on - strand, within GFF3155at 31.705 kb on + strand, within GFF3155at 31.711 kb on + strand, within GFF3155at 31.712 kb on + strand, within GFF3155at 31.712 kb on - strand, within GFF3155at 31.780 kb on + strand, within GFF3155at 31.780 kb on + strand, within GFF3155at 31.780 kb on + strand, within GFF3155at 31.781 kb on - strand, within GFF3155at 31.945 kb on + strand, within GFF3155at 32.076 kb on + strand, within GFF3155at 32.076 kb on + strand, within GFF3155at 32.076 kb on + strand, within GFF3155at 32.076 kb on + strand, within GFF3155at 32.077 kb on - strand, within GFF3155at 32.077 kb on - strand, within GFF3155at 32.116 kb on + strand, within GFF3155at 32.117 kb on - strand, within GFF3155at 32.152 kb on + strand, within GFF3155at 32.152 kb on + strand, within GFF3155at 32.152 kb on + strand, within GFF3155at 32.152 kb on + strand, within GFF3155at 32.153 kb on - strand, within GFF3155at 32.153 kb on - strand, within GFF3155at 32.186 kb on - strand, within GFF3155

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
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30,132 + GFF3153 0.20 -0.7
30,133 - GFF3153 0.20 -0.5
30,147 + GFF3153 0.23 -0.6
30,147 + GFF3153 0.23 -1.6
30,147 + GFF3153 0.23 -0.9
30,148 - GFF3153 0.23 -0.8
30,148 - GFF3153 0.23 +1.0
30,148 - GFF3153 0.23 -0.0
30,204 + GFF3153 0.33 +0.0
30,204 + GFF3153 0.33 -1.6
30,204 + GFF3153 0.33 +0.7
30,204 + GFF3153 0.33 +0.4
30,205 - GFF3153 0.34 +0.6
30,205 - GFF3153 0.34 -1.1
30,205 - GFF3153 0.34 -0.2
30,205 - GFF3153 0.34 -0.2
30,448 - GFF3153 0.79 -1.6
30,623 + +0.4
30,624 - -1.4
30,725 + -0.2
30,726 - -0.9
30,774 + GFF3154 0.10 +1.2
30,774 + GFF3154 0.10 +0.1
30,774 + GFF3154 0.10 +0.4
30,775 - GFF3154 0.10 +1.4
30,775 - GFF3154 0.10 -1.0
31,109 + GFF3154 0.77 +0.8
31,110 - GFF3154 0.78 +0.5
31,281 + -0.0
31,282 - +1.6
31,394 - +0.5
31,394 - -0.4
31,695 + GFF3155 0.29 -0.6
31,695 + GFF3155 0.29 -1.6
31,696 - GFF3155 0.29 +0.2
31,696 - GFF3155 0.29 +0.1
31,705 + GFF3155 0.30 -2.0
31,711 + GFF3155 0.31 -0.0
31,712 + GFF3155 0.31 +0.4
31,712 - GFF3155 0.31 -0.0
31,780 + GFF3155 0.39 +0.4
31,780 + GFF3155 0.39 -0.2
31,780 + GFF3155 0.39 +0.3
31,781 - GFF3155 0.39 +1.4
31,945 + GFF3155 0.58 +0.6
32,076 + GFF3155 0.74 +0.6
32,076 + GFF3155 0.74 +0.2
32,076 + GFF3155 0.74 -0.8
32,076 + GFF3155 0.74 +0.9
32,077 - GFF3155 0.74 +0.2
32,077 - GFF3155 0.74 +0.4
32,116 + GFF3155 0.78 -0.6
32,117 - GFF3155 0.79 +0.3
32,152 + GFF3155 0.83 +0.4
32,152 + GFF3155 0.83 +0.4
32,152 + GFF3155 0.83 +0.4
32,152 + GFF3155 0.83 +0.2
32,153 - GFF3155 0.83 -1.2
32,153 - GFF3155 0.83 -0.3
32,186 - GFF3155 0.87 +0.3

Or see this region's nucleotide sequence