Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3133 and GFF3134 are separated by 21 nucleotides GFF3134 and GFF3135 are separated by 9 nucleotides GFF3135 and GFF3136 are separated by 262 nucleotides
GFF3133 - IncF plasmid conjugative transfer protein TraG, at 9,486 to 12,257
GFF3133
GFF3134 - IncF plasmid conjugative transfer pilus assembly protein TraH, at 12,279 to 13,727
GFF3134
GFF3135 - IncF plasmid conjugative transfer pilus assembly protein TraF, at 13,737 to 14,360
GFF3135
GFF3136 - hypothetical protein, at 14,623 to 15,009
GFF3136
Position (kb) 12
13
14 Strain fitness (log2 ratio) -1
0
1
2 at 11.413 kb on - strand, within GFF3133 at 11.587 kb on + strand, within GFF3133 at 11.734 kb on + strand, within GFF3133 at 11.734 kb on + strand, within GFF3133 at 11.735 kb on - strand, within GFF3133 at 11.735 kb on - strand, within GFF3133 at 11.735 kb on - strand, within GFF3133 at 11.735 kb on - strand, within GFF3133 at 11.851 kb on + strand, within GFF3133 at 11.852 kb on - strand, within GFF3133 at 12.239 kb on - strand at 12.244 kb on + strand at 12.244 kb on + strand at 12.245 kb on - strand at 12.245 kb on - strand at 12.407 kb on - strand at 12.556 kb on + strand, within GFF3134 at 12.563 kb on - strand, within GFF3134 at 12.652 kb on + strand, within GFF3134 at 12.952 kb on + strand, within GFF3134 at 12.952 kb on + strand, within GFF3134 at 12.953 kb on - strand, within GFF3134 at 13.204 kb on + strand, within GFF3134 at 13.480 kb on - strand, within GFF3134 at 13.495 kb on + strand, within GFF3134 at 13.495 kb on + strand, within GFF3134 at 13.496 kb on - strand, within GFF3134 at 13.538 kb on - strand, within GFF3134 at 13.580 kb on - strand, within GFF3134 at 14.065 kb on + strand, within GFF3135 at 14.236 kb on + strand, within GFF3135 at 14.455 kb on + strand at 14.564 kb on + strand at 14.566 kb on - strand at 14.660 kb on + strand at 14.661 kb on + strand at 14.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 11,413 - GFF3133 0.70 +1.1 11,587 + GFF3133 0.76 +2.0 11,734 + GFF3133 0.81 +0.2 11,734 + GFF3133 0.81 +0.6 11,735 - GFF3133 0.81 +1.0 11,735 - GFF3133 0.81 -0.2 11,735 - GFF3133 0.81 -0.9 11,735 - GFF3133 0.81 -0.0 11,851 + GFF3133 0.85 +0.4 11,852 - GFF3133 0.85 +0.5 12,239 - -0.1 12,244 + -0.2 12,244 + -1.0 12,245 - +0.2 12,245 - -0.6 12,407 - -0.4 12,556 + GFF3134 0.19 -0.0 12,563 - GFF3134 0.20 +1.2 12,652 + GFF3134 0.26 +0.5 12,952 + GFF3134 0.46 -0.8 12,952 + GFF3134 0.46 -0.4 12,953 - GFF3134 0.47 +0.5 13,204 + GFF3134 0.64 -1.4 13,480 - GFF3134 0.83 -0.2 13,495 + GFF3134 0.84 -0.9 13,495 + GFF3134 0.84 +0.2 13,496 - GFF3134 0.84 -0.2 13,538 - GFF3134 0.87 -0.6 13,580 - GFF3134 0.90 -1.0 14,065 + GFF3135 0.53 +0.1 14,236 + GFF3135 0.80 -0.5 14,455 + +0.0 14,564 + -0.7 14,566 - -0.7 14,660 + -0.2 14,661 + +0.6 14,661 - +0.1
Or see this region's nucleotide sequence