Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2656

Experiment: Ying_all64 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2653 and GFF2654 overlap by 4 nucleotidesGFF2654 and GFF2655 overlap by 4 nucleotidesGFF2655 and GFF2656 overlap by 4 nucleotidesGFF2656 and GFF2657 are separated by 8 nucleotidesGFF2657 and GFF2658 overlap by 1 nucleotides GFF2653 - Na(+) H(+) antiporter subunit G, at 246,890 to 247,291 GFF2653 GFF2654 - Na(+) H(+) antiporter subunit F, at 247,288 to 247,566 GFF2654 GFF2655 - Na(+) H(+) antiporter subunit E, at 247,563 to 248,054 GFF2655 GFF2656 - Na(+) H(+) antiporter subunit D, at 248,051 to 249,760 GFF2656 GFF2657 - Na(+) H(+) antiporter subunit C, at 249,769 to 250,113 GFF2657 GFF2658 - Na(+) H(+) antiporter subunit A; Na(+) H(+) antiporter subunit B, at 250,113 to 253,061 GFF2658 Position (kb) 248 249 250Strain fitness (log2 ratio) -2 -1 0 1 2at 247.101 kb on + strand, within GFF2653at 247.101 kb on + strand, within GFF2653at 247.101 kb on + strand, within GFF2653at 247.101 kb on + strand, within GFF2653at 247.101 kb on + strand, within GFF2653at 247.101 kb on + strand, within GFF2653at 247.102 kb on - strand, within GFF2653at 247.102 kb on - strand, within GFF2653at 247.102 kb on - strand, within GFF2653at 247.102 kb on - strand, within GFF2653at 247.102 kb on - strand, within GFF2653at 247.102 kb on - strand, within GFF2653at 247.379 kb on + strand, within GFF2654at 247.379 kb on + strand, within GFF2654at 247.380 kb on - strand, within GFF2654at 247.380 kb on - strand, within GFF2654at 247.380 kb on - strand, within GFF2654at 247.436 kb on + strand, within GFF2654at 247.485 kb on - strand, within GFF2654at 247.520 kb on + strand, within GFF2654at 247.594 kb on + strandat 247.978 kb on + strand, within GFF2655at 247.978 kb on + strand, within GFF2655at 247.978 kb on + strand, within GFF2655at 247.978 kb on + strand, within GFF2655at 247.979 kb on - strand, within GFF2655at 248.139 kb on + strandat 248.139 kb on + strandat 248.140 kb on - strandat 248.154 kb on + strandat 248.155 kb on - strandat 248.155 kb on - strandat 248.181 kb on + strandat 248.250 kb on + strand, within GFF2656at 248.724 kb on + strand, within GFF2656at 248.724 kb on + strand, within GFF2656at 248.725 kb on - strand, within GFF2656at 248.725 kb on - strand, within GFF2656at 248.725 kb on - strand, within GFF2656at 248.725 kb on - strand, within GFF2656at 248.725 kb on - strand, within GFF2656at 248.725 kb on - strand, within GFF2656at 248.727 kb on + strand, within GFF2656at 248.728 kb on - strand, within GFF2656at 248.961 kb on + strand, within GFF2656at 248.961 kb on + strand, within GFF2656at 248.961 kb on + strand, within GFF2656at 248.961 kb on + strand, within GFF2656at 248.962 kb on - strand, within GFF2656at 248.962 kb on - strand, within GFF2656at 249.021 kb on + strand, within GFF2656at 249.022 kb on - strand, within GFF2656at 249.183 kb on + strand, within GFF2656at 249.183 kb on + strand, within GFF2656at 249.183 kb on + strand, within GFF2656at 249.183 kb on + strand, within GFF2656at 249.183 kb on + strand, within GFF2656at 249.183 kb on + strand, within GFF2656at 249.184 kb on - strand, within GFF2656at 249.184 kb on - strand, within GFF2656at 249.184 kb on - strand, within GFF2656at 249.184 kb on - strand, within GFF2656at 249.184 kb on - strand, within GFF2656at 249.184 kb on - strand, within GFF2656at 249.184 kb on - strand, within GFF2656at 249.240 kb on + strand, within GFF2656at 249.240 kb on + strand, within GFF2656at 249.240 kb on + strand, within GFF2656at 249.240 kb on + strand, within GFF2656at 249.240 kb on + strand, within GFF2656at 249.241 kb on - strand, within GFF2656at 249.241 kb on - strand, within GFF2656at 249.241 kb on - strand, within GFF2656at 249.241 kb on - strand, within GFF2656at 249.241 kb on - strand, within GFF2656at 249.241 kb on - strand, within GFF2656at 249.241 kb on - strand, within GFF2656at 249.294 kb on + strand, within GFF2656at 249.543 kb on + strand, within GFF2656at 249.543 kb on + strand, within GFF2656at 249.550 kb on - strand, within GFF2656at 249.911 kb on + strand, within GFF2657at 249.912 kb on - strand, within GFF2657at 250.037 kb on + strand, within GFF2657at 250.037 kb on + strand, within GFF2657at 250.038 kb on - strand, within GFF2657at 250.247 kb on - strandat 250.441 kb on + strand, within GFF2658at 250.441 kb on + strand, within GFF2658at 250.442 kb on - strand, within GFF2658at 250.442 kb on - strand, within GFF2658at 250.522 kb on + strand, within GFF2658at 250.523 kb on - strand, within GFF2658at 250.714 kb on + strand, within GFF2658at 250.714 kb on + strand, within GFF2658at 250.715 kb on - strand, within GFF2658at 250.715 kb on - strand, within GFF2658

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
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247,101 + GFF2653 0.52 -0.0
247,101 + GFF2653 0.52 -0.0
247,101 + GFF2653 0.52 +0.5
247,101 + GFF2653 0.52 +0.3
247,101 + GFF2653 0.52 -0.4
247,101 + GFF2653 0.52 +0.2
247,102 - GFF2653 0.53 +0.3
247,102 - GFF2653 0.53 -0.5
247,102 - GFF2653 0.53 -0.2
247,102 - GFF2653 0.53 -0.5
247,102 - GFF2653 0.53 +1.5
247,102 - GFF2653 0.53 +0.2
247,379 + GFF2654 0.33 +0.5
247,379 + GFF2654 0.33 +0.3
247,380 - GFF2654 0.33 +1.8
247,380 - GFF2654 0.33 +0.2
247,380 - GFF2654 0.33 -0.0
247,436 + GFF2654 0.53 -0.1
247,485 - GFF2654 0.71 +0.3
247,520 + GFF2654 0.83 -0.6
247,594 + +1.4
247,978 + GFF2655 0.84 -0.4
247,978 + GFF2655 0.84 +0.5
247,978 + GFF2655 0.84 +0.1
247,978 + GFF2655 0.84 +0.6
247,979 - GFF2655 0.85 -0.7
248,139 + -0.6
248,139 + +0.5
248,140 - +0.3
248,154 + +0.3
248,155 - -0.1
248,155 - +0.3
248,181 + -0.4
248,250 + GFF2656 0.12 -0.1
248,724 + GFF2656 0.39 +1.0
248,724 + GFF2656 0.39 -1.2
248,725 - GFF2656 0.39 -0.3
248,725 - GFF2656 0.39 -0.9
248,725 - GFF2656 0.39 -1.8
248,725 - GFF2656 0.39 -1.4
248,725 - GFF2656 0.39 -0.1
248,725 - GFF2656 0.39 +1.0
248,727 + GFF2656 0.40 -0.1
248,728 - GFF2656 0.40 +0.2
248,961 + GFF2656 0.53 -0.4
248,961 + GFF2656 0.53 -1.0
248,961 + GFF2656 0.53 -0.6
248,961 + GFF2656 0.53 -0.4
248,962 - GFF2656 0.53 -1.0
248,962 - GFF2656 0.53 -0.5
249,021 + GFF2656 0.57 +0.2
249,022 - GFF2656 0.57 -1.2
249,183 + GFF2656 0.66 -0.3
249,183 + GFF2656 0.66 +0.1
249,183 + GFF2656 0.66 -0.7
249,183 + GFF2656 0.66 +0.6
249,183 + GFF2656 0.66 +0.8
249,183 + GFF2656 0.66 +0.0
249,184 - GFF2656 0.66 +0.6
249,184 - GFF2656 0.66 -0.6
249,184 - GFF2656 0.66 +0.7
249,184 - GFF2656 0.66 -0.2
249,184 - GFF2656 0.66 +0.1
249,184 - GFF2656 0.66 -0.1
249,184 - GFF2656 0.66 +0.4
249,240 + GFF2656 0.70 -1.9
249,240 + GFF2656 0.70 -0.2
249,240 + GFF2656 0.70 +0.4
249,240 + GFF2656 0.70 +0.0
249,240 + GFF2656 0.70 +0.3
249,241 - GFF2656 0.70 -0.3
249,241 - GFF2656 0.70 -0.4
249,241 - GFF2656 0.70 -0.2
249,241 - GFF2656 0.70 +0.0
249,241 - GFF2656 0.70 -0.5
249,241 - GFF2656 0.70 -0.2
249,241 - GFF2656 0.70 +0.3
249,294 + GFF2656 0.73 -0.4
249,543 + GFF2656 0.87 +1.1
249,543 + GFF2656 0.87 -0.1
249,550 - GFF2656 0.88 -0.2
249,911 + GFF2657 0.41 +0.6
249,912 - GFF2657 0.41 +0.1
250,037 + GFF2657 0.78 +0.6
250,037 + GFF2657 0.78 +0.2
250,038 - GFF2657 0.78 -0.5
250,247 - +0.1
250,441 + GFF2658 0.11 -1.2
250,441 + GFF2658 0.11 -0.1
250,442 - GFF2658 0.11 -0.1
250,442 - GFF2658 0.11 -0.4
250,522 + GFF2658 0.14 -0.1
250,523 - GFF2658 0.14 -0.9
250,714 + GFF2658 0.20 -0.4
250,714 + GFF2658 0.20 -0.4
250,715 - GFF2658 0.20 -1.2
250,715 - GFF2658 0.20 +0.4

Or see this region's nucleotide sequence