Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2601 and GFF2602 are separated by 76 nucleotides GFF2602 and GFF2603 are separated by 125 nucleotides
GFF2601 - FIG00787877: hypothetical protein, at 193,374 to 194,717
GFF2601
GFF2602 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 194,794 to 195,300
GFF2602
GFF2603 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 195,426 to 196,526
GFF2603
Position (kb) 194
195
196 Strain fitness (log2 ratio) -2
-1
0
1 at 193.867 kb on + strand, within GFF2601 at 193.868 kb on - strand, within GFF2601 at 194.748 kb on + strand at 194.749 kb on - strand at 195.020 kb on + strand, within GFF2602 at 195.021 kb on - strand, within GFF2602 at 195.021 kb on - strand, within GFF2602 at 195.077 kb on + strand, within GFF2602 at 195.077 kb on + strand, within GFF2602 at 195.302 kb on - strand at 195.391 kb on + strand at 195.391 kb on + strand at 195.392 kb on - strand at 195.392 kb on - strand at 195.392 kb on - strand at 195.392 kb on - strand at 195.403 kb on + strand at 195.404 kb on - strand at 195.404 kb on - strand at 195.410 kb on - strand at 195.471 kb on + strand at 195.471 kb on + strand at 195.472 kb on - strand at 195.543 kb on + strand, within GFF2603 at 195.543 kb on + strand, within GFF2603 at 195.544 kb on - strand, within GFF2603 at 195.807 kb on + strand, within GFF2603 at 195.808 kb on - strand, within GFF2603 at 195.808 kb on - strand, within GFF2603 at 195.808 kb on - strand, within GFF2603 at 195.837 kb on + strand, within GFF2603 at 195.838 kb on - strand, within GFF2603 at 196.039 kb on - strand, within GFF2603
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 193,867 + GFF2601 0.37 -0.1 193,868 - GFF2601 0.37 +0.3 194,748 + +0.2 194,749 - -0.3 195,020 + GFF2602 0.45 -0.1 195,021 - GFF2602 0.45 -2.7 195,021 - GFF2602 0.45 -0.3 195,077 + GFF2602 0.56 -1.6 195,077 + GFF2602 0.56 -1.0 195,302 - +0.0 195,391 + +0.5 195,391 + +0.2 195,392 - -0.2 195,392 - +0.3 195,392 - -0.0 195,392 - -0.4 195,403 + +0.4 195,404 - -0.3 195,404 - +0.8 195,410 - -0.1 195,471 + -0.3 195,471 + +0.6 195,472 - +0.0 195,543 + GFF2603 0.11 -2.4 195,543 + GFF2603 0.11 +0.2 195,544 - GFF2603 0.11 -2.2 195,807 + GFF2603 0.35 -1.0 195,808 - GFF2603 0.35 +0.0 195,808 - GFF2603 0.35 +0.0 195,808 - GFF2603 0.35 +0.0 195,837 + GFF2603 0.37 +0.0 195,838 - GFF2603 0.37 -0.4 196,039 - GFF2603 0.56 -0.1
Or see this region's nucleotide sequence