Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2560

Experiment: Ying_all64 rep B; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2559 and GFF2560 are separated by 113 nucleotidesGFF2560 and GFF2561 are separated by 7 nucleotidesGFF2561 and GFF2562 overlap by 4 nucleotides GFF2559 - hypothetical protein, at 147,973 to 149,823 GFF2559 GFF2560 - hypothetical protein, at 149,937 to 150,752 GFF2560 GFF2561 - hypothetical protein, at 150,760 to 151,221 GFF2561 GFF2562 - hypothetical protein, at 151,218 to 151,877 GFF2562 Position (kb) 149 150 151Strain fitness (log2 ratio) -1 0 1 2at 148.973 kb on + strand, within GFF2559at 148.974 kb on - strand, within GFF2559at 149.483 kb on + strand, within GFF2559at 149.483 kb on + strand, within GFF2559at 149.483 kb on + strand, within GFF2559at 149.483 kb on + strand, within GFF2559at 149.483 kb on + strand, within GFF2559at 149.483 kb on - strand, within GFF2559at 149.484 kb on - strand, within GFF2559at 149.484 kb on - strand, within GFF2559at 149.484 kb on - strand, within GFF2559at 149.484 kb on - strand, within GFF2559at 149.621 kb on + strand, within GFF2559at 149.621 kb on + strand, within GFF2559at 149.621 kb on + strand, within GFF2559at 149.622 kb on - strand, within GFF2559at 149.622 kb on - strand, within GFF2559at 149.622 kb on - strand, within GFF2559at 149.622 kb on - strand, within GFF2559at 149.622 kb on - strand, within GFF2559at 149.622 kb on - strand, within GFF2559at 149.622 kb on - strand, within GFF2559at 149.672 kb on + strandat 149.672 kb on + strandat 149.672 kb on + strandat 149.672 kb on + strandat 149.673 kb on - strandat 149.673 kb on - strandat 149.682 kb on - strandat 149.771 kb on + strandat 149.771 kb on + strandat 149.771 kb on + strandat 149.771 kb on + strandat 149.772 kb on - strandat 149.777 kb on + strandat 149.778 kb on - strandat 149.778 kb on - strandat 149.778 kb on - strandat 149.835 kb on - strandat 150.274 kb on + strand, within GFF2560at 150.275 kb on - strand, within GFF2560at 150.544 kb on + strand, within GFF2560at 150.544 kb on + strand, within GFF2560at 150.545 kb on - strand, within GFF2560at 150.545 kb on - strand, within GFF2560at 150.545 kb on - strand, within GFF2560at 150.553 kb on + strand, within GFF2560at 150.553 kb on + strand, within GFF2560at 150.553 kb on + strand, within GFF2560at 150.554 kb on - strand, within GFF2560at 150.554 kb on - strand, within GFF2560at 150.649 kb on + strand, within GFF2560at 150.650 kb on - strand, within GFF2560at 150.986 kb on + strand, within GFF2561at 150.986 kb on + strand, within GFF2561at 150.986 kb on + strand, within GFF2561at 150.986 kb on + strand, within GFF2561at 150.986 kb on + strand, within GFF2561at 150.986 kb on + strand, within GFF2561at 150.986 kb on + strand, within GFF2561at 150.986 kb on + strand, within GFF2561at 150.986 kb on + strand, within GFF2561at 150.986 kb on + strand, within GFF2561at 150.987 kb on - strand, within GFF2561at 150.987 kb on - strand, within GFF2561at 150.987 kb on - strand, within GFF2561at 150.987 kb on - strand, within GFF2561at 150.987 kb on - strand, within GFF2561at 151.237 kb on + strandat 151.237 kb on + strandat 151.237 kb on + strandat 151.238 kb on - strandat 151.238 kb on - strandat 151.238 kb on - strandat 151.238 kb on - strandat 151.238 kb on - strandat 151.238 kb on - strandat 151.238 kb on - strandat 151.255 kb on + strandat 151.255 kb on + strandat 151.255 kb on + strandat 151.255 kb on + strandat 151.256 kb on - strandat 151.288 kb on + strand, within GFF2562at 151.288 kb on + strand, within GFF2562at 151.288 kb on + strand, within GFF2562at 151.288 kb on + strand, within GFF2562at 151.288 kb on + strand, within GFF2562at 151.288 kb on + strand, within GFF2562at 151.288 kb on + strand, within GFF2562at 151.289 kb on - strand, within GFF2562at 151.289 kb on - strand, within GFF2562at 151.289 kb on - strand, within GFF2562at 151.289 kb on - strand, within GFF2562at 151.294 kb on + strand, within GFF2562at 151.294 kb on + strand, within GFF2562at 151.294 kb on + strand, within GFF2562at 151.294 kb on + strand, within GFF2562at 151.294 kb on + strand, within GFF2562at 151.294 kb on + strand, within GFF2562at 151.295 kb on - strand, within GFF2562at 151.295 kb on - strand, within GFF2562at 151.295 kb on - strand, within GFF2562at 151.295 kb on - strand, within GFF2562at 151.295 kb on - strand, within GFF2562at 151.295 kb on - strand, within GFF2562at 151.295 kb on - strand, within GFF2562at 151.315 kb on + strand, within GFF2562at 151.315 kb on + strand, within GFF2562at 151.315 kb on + strand, within GFF2562at 151.316 kb on - strand, within GFF2562at 151.316 kb on - strand, within GFF2562

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
remove
148,973 + GFF2559 0.54 +0.8
148,974 - GFF2559 0.54 +0.7
149,483 + GFF2559 0.82 -1.4
149,483 + GFF2559 0.82 -0.2
149,483 + GFF2559 0.82 +1.0
149,483 + GFF2559 0.82 +0.0
149,483 + GFF2559 0.82 -1.6
149,483 - GFF2559 0.82 -0.2
149,484 - GFF2559 0.82 +1.1
149,484 - GFF2559 0.82 -0.2
149,484 - GFF2559 0.82 +1.9
149,484 - GFF2559 0.82 -1.6
149,621 + GFF2559 0.89 -0.1
149,621 + GFF2559 0.89 -0.2
149,621 + GFF2559 0.89 +0.4
149,622 - GFF2559 0.89 -0.5
149,622 - GFF2559 0.89 -0.1
149,622 - GFF2559 0.89 -0.1
149,622 - GFF2559 0.89 -1.1
149,622 - GFF2559 0.89 +0.1
149,622 - GFF2559 0.89 -0.6
149,622 - GFF2559 0.89 +0.5
149,672 + +0.0
149,672 + +0.4
149,672 + +0.8
149,672 + +0.7
149,673 - +0.8
149,673 - +0.7
149,682 - +0.9
149,771 + -0.1
149,771 + +0.4
149,771 + +0.2
149,771 + -0.4
149,772 - +0.6
149,777 + -0.3
149,778 - -0.4
149,778 - +0.0
149,778 - +2.0
149,835 - +0.6
150,274 + GFF2560 0.41 +0.9
150,275 - GFF2560 0.41 -0.6
150,544 + GFF2560 0.74 -0.0
150,544 + GFF2560 0.74 +0.3
150,545 - GFF2560 0.75 +0.5
150,545 - GFF2560 0.75 +0.5
150,545 - GFF2560 0.75 +0.1
150,553 + GFF2560 0.75 -0.0
150,553 + GFF2560 0.75 +1.7
150,553 + GFF2560 0.75 +0.7
150,554 - GFF2560 0.76 -0.1
150,554 - GFF2560 0.76 -0.0
150,649 + GFF2560 0.87 +0.7
150,650 - GFF2560 0.87 +0.0
150,986 + GFF2561 0.49 +0.8
150,986 + GFF2561 0.49 +0.3
150,986 + GFF2561 0.49 -0.0
150,986 + GFF2561 0.49 +0.2
150,986 + GFF2561 0.49 +0.4
150,986 + GFF2561 0.49 -0.2
150,986 + GFF2561 0.49 +0.3
150,986 + GFF2561 0.49 +1.6
150,986 + GFF2561 0.49 -0.0
150,986 + GFF2561 0.49 +0.2
150,987 - GFF2561 0.49 +0.4
150,987 - GFF2561 0.49 +0.4
150,987 - GFF2561 0.49 +0.6
150,987 - GFF2561 0.49 +0.3
150,987 - GFF2561 0.49 -0.6
151,237 + +1.1
151,237 + +0.3
151,237 + +0.4
151,238 - -0.1
151,238 - -0.2
151,238 - +0.3
151,238 - +0.3
151,238 - +1.3
151,238 - +0.3
151,238 - +0.3
151,255 + +0.6
151,255 + +0.2
151,255 + -1.2
151,255 + -0.9
151,256 - +0.0
151,288 + GFF2562 0.11 +0.1
151,288 + GFF2562 0.11 -0.6
151,288 + GFF2562 0.11 +0.8
151,288 + GFF2562 0.11 +1.4
151,288 + GFF2562 0.11 +0.0
151,288 + GFF2562 0.11 -0.7
151,288 + GFF2562 0.11 -0.1
151,289 - GFF2562 0.11 -0.5
151,289 - GFF2562 0.11 +0.4
151,289 - GFF2562 0.11 +0.3
151,289 - GFF2562 0.11 +1.1
151,294 + GFF2562 0.12 +0.2
151,294 + GFF2562 0.12 +1.2
151,294 + GFF2562 0.12 -1.0
151,294 + GFF2562 0.12 +0.3
151,294 + GFF2562 0.12 +0.9
151,294 + GFF2562 0.12 +1.6
151,295 - GFF2562 0.12 -0.0
151,295 - GFF2562 0.12 -0.4
151,295 - GFF2562 0.12 -0.4
151,295 - GFF2562 0.12 +0.8
151,295 - GFF2562 0.12 -0.1
151,295 - GFF2562 0.12 +0.2
151,295 - GFF2562 0.12 -0.7
151,315 + GFF2562 0.15 +0.8
151,315 + GFF2562 0.15 -0.5
151,315 + GFF2562 0.15 +0.9
151,316 - GFF2562 0.15 +0.8
151,316 - GFF2562 0.15 +1.4

Or see this region's nucleotide sequence