Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2534 and GFF2535 are separated by 29 nucleotides GFF2535 and GFF2536 are separated by 11 nucleotides
GFF2534 - FIG005080: Possible exported protein, at 117,093 to 121,220
GFF2534
GFF2535 - FIG003879: Predicted amidohydrolase, at 121,250 to 122,056
GFF2535
GFF2536 - two-component hybrid sensor and regulator, at 122,068 to 124,149
GFF2536
Position (kb) 121
122
123 Strain fitness (log2 ratio) -1
0
1
2 at 120.261 kb on + strand, within GFF2534 at 120.261 kb on + strand, within GFF2534 at 120.262 kb on - strand, within GFF2534 at 120.262 kb on - strand, within GFF2534 at 120.262 kb on - strand, within GFF2534 at 120.262 kb on - strand, within GFF2534 at 120.687 kb on + strand, within GFF2534 at 121.218 kb on + strand at 121.218 kb on + strand at 121.218 kb on + strand at 121.218 kb on + strand at 121.218 kb on + strand at 121.219 kb on - strand at 121.219 kb on - strand at 121.219 kb on - strand at 121.219 kb on - strand at 121.219 kb on - strand at 121.371 kb on - strand, within GFF2535 at 121.371 kb on - strand, within GFF2535 at 121.371 kb on - strand, within GFF2535 at 121.625 kb on + strand, within GFF2535 at 121.625 kb on + strand, within GFF2535 at 121.626 kb on - strand, within GFF2535 at 121.626 kb on - strand, within GFF2535 at 121.724 kb on + strand, within GFF2535 at 121.748 kb on + strand, within GFF2535 at 121.749 kb on - strand, within GFF2535 at 121.796 kb on + strand, within GFF2535 at 121.796 kb on + strand, within GFF2535 at 121.797 kb on - strand, within GFF2535 at 121.797 kb on - strand, within GFF2535 at 121.797 kb on - strand, within GFF2535 at 122.635 kb on + strand, within GFF2536 at 122.636 kb on - strand, within GFF2536 at 123.041 kb on - strand, within GFF2536 at 123.041 kb on - strand, within GFF2536
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 120,261 + GFF2534 0.77 +0.4 120,261 + GFF2534 0.77 -0.2 120,262 - GFF2534 0.77 -0.8 120,262 - GFF2534 0.77 +1.1 120,262 - GFF2534 0.77 -0.1 120,262 - GFF2534 0.77 -0.0 120,687 + GFF2534 0.87 +0.1 121,218 + -0.3 121,218 + -0.1 121,218 + -0.7 121,218 + +0.3 121,218 + +0.7 121,219 - -0.6 121,219 - -0.2 121,219 - -0.3 121,219 - -0.4 121,219 - +1.2 121,371 - GFF2535 0.15 +0.4 121,371 - GFF2535 0.15 -0.1 121,371 - GFF2535 0.15 +1.8 121,625 + GFF2535 0.46 +0.0 121,625 + GFF2535 0.46 +0.2 121,626 - GFF2535 0.47 -0.4 121,626 - GFF2535 0.47 +0.0 121,724 + GFF2535 0.59 -1.4 121,748 + GFF2535 0.62 +0.6 121,749 - GFF2535 0.62 -0.3 121,796 + GFF2535 0.68 +1.6 121,796 + GFF2535 0.68 +1.1 121,797 - GFF2535 0.68 +0.4 121,797 - GFF2535 0.68 +0.4 121,797 - GFF2535 0.68 -0.3 122,635 + GFF2536 0.27 +0.8 122,636 - GFF2536 0.27 -0.3 123,041 - GFF2536 0.47 -0.1 123,041 - GFF2536 0.47 +0.2
Or see this region's nucleotide sequence