Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2500 and GFF2501 are separated by 17 nucleotides GFF2501 and GFF2502 are separated by 9 nucleotides GFF2502 and GFF2503 are separated by 96 nucleotides
GFF2500 - RecA protein, at 86,703 to 87,818
GFF2500
GFF2501 - Regulatory protein RecX, at 87,836 to 88,297
GFF2501
GFF2502 - possible transmembrane-transport protein, at 88,307 to 89,839
GFF2502
GFF2503 - N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38), at 89,936 to 90,847
GFF2503
Position (kb) 88
89
90 Strain fitness (log2 ratio) -1
0
1
2 at 87.381 kb on + strand, within GFF2500 at 87.381 kb on + strand, within GFF2500 at 87.381 kb on + strand, within GFF2500 at 87.381 kb on + strand, within GFF2500 at 87.381 kb on + strand, within GFF2500 at 87.382 kb on - strand, within GFF2500 at 87.382 kb on - strand, within GFF2500 at 87.382 kb on - strand, within GFF2500 at 87.382 kb on - strand, within GFF2500 at 87.600 kb on + strand, within GFF2500 at 87.601 kb on - strand, within GFF2500 at 87.606 kb on + strand, within GFF2500 at 87.606 kb on + strand, within GFF2500 at 87.607 kb on - strand, within GFF2500 at 88.554 kb on + strand, within GFF2502 at 88.554 kb on + strand, within GFF2502 at 88.555 kb on - strand, within GFF2502 at 88.834 kb on - strand, within GFF2502 at 88.962 kb on + strand, within GFF2502 at 88.962 kb on + strand, within GFF2502 at 88.962 kb on + strand, within GFF2502 at 88.962 kb on + strand, within GFF2502 at 88.962 kb on + strand, within GFF2502 at 88.963 kb on - strand, within GFF2502 at 88.963 kb on - strand, within GFF2502 at 88.963 kb on - strand, within GFF2502 at 88.995 kb on + strand, within GFF2502 at 88.995 kb on + strand, within GFF2502 at 88.996 kb on - strand, within GFF2502 at 88.996 kb on - strand, within GFF2502 at 88.996 kb on - strand, within GFF2502 at 88.996 kb on - strand, within GFF2502 at 88.996 kb on - strand, within GFF2502 at 88.996 kb on - strand, within GFF2502 at 89.325 kb on + strand, within GFF2502 at 89.325 kb on + strand, within GFF2502 at 89.325 kb on + strand, within GFF2502 at 89.325 kb on + strand, within GFF2502 at 89.325 kb on + strand, within GFF2502 at 89.326 kb on - strand, within GFF2502 at 89.326 kb on - strand, within GFF2502 at 89.326 kb on - strand, within GFF2502 at 89.326 kb on - strand, within GFF2502 at 89.376 kb on + strand, within GFF2502 at 89.646 kb on + strand, within GFF2502 at 89.646 kb on + strand, within GFF2502 at 89.646 kb on + strand, within GFF2502 at 89.646 kb on + strand, within GFF2502 at 89.646 kb on + strand, within GFF2502 at 89.646 kb on + strand, within GFF2502 at 89.646 kb on + strand, within GFF2502 at 89.646 kb on + strand, within GFF2502 at 89.646 kb on + strand, within GFF2502 at 89.647 kb on - strand, within GFF2502 at 89.647 kb on - strand, within GFF2502 at 89.647 kb on - strand, within GFF2502 at 89.647 kb on - strand, within GFF2502 at 89.647 kb on - strand, within GFF2502 at 89.647 kb on - strand, within GFF2502 at 89.742 kb on + strand at 89.742 kb on + strand at 89.742 kb on + strand at 89.742 kb on + strand at 89.742 kb on + strand at 89.742 kb on + strand at 89.743 kb on - strand at 89.743 kb on - strand at 89.743 kb on - strand at 89.743 kb on - strand at 89.937 kb on + strand at 89.938 kb on - strand at 89.938 kb on - strand at 89.938 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 87,381 + GFF2500 0.61 +1.6 87,381 + GFF2500 0.61 +0.7 87,381 + GFF2500 0.61 -0.9 87,381 + GFF2500 0.61 -0.3 87,381 + GFF2500 0.61 +0.4 87,382 - GFF2500 0.61 -0.1 87,382 - GFF2500 0.61 -0.1 87,382 - GFF2500 0.61 -0.6 87,382 - GFF2500 0.61 -0.3 87,600 + GFF2500 0.80 +0.8 87,601 - GFF2500 0.80 +0.4 87,606 + GFF2500 0.81 +0.6 87,606 + GFF2500 0.81 -0.6 87,607 - GFF2500 0.81 -1.5 88,554 + GFF2502 0.16 +0.9 88,554 + GFF2502 0.16 -0.5 88,555 - GFF2502 0.16 -0.6 88,834 - GFF2502 0.34 -0.0 88,962 + GFF2502 0.43 -1.2 88,962 + GFF2502 0.43 -0.2 88,962 + GFF2502 0.43 +0.3 88,962 + GFF2502 0.43 -0.9 88,962 + GFF2502 0.43 -0.0 88,963 - GFF2502 0.43 +0.0 88,963 - GFF2502 0.43 -0.9 88,963 - GFF2502 0.43 -0.4 88,995 + GFF2502 0.45 +0.5 88,995 + GFF2502 0.45 +0.4 88,996 - GFF2502 0.45 -0.4 88,996 - GFF2502 0.45 +0.0 88,996 - GFF2502 0.45 +0.4 88,996 - GFF2502 0.45 +1.3 88,996 - GFF2502 0.45 +0.9 88,996 - GFF2502 0.45 +0.4 89,325 + GFF2502 0.66 +0.6 89,325 + GFF2502 0.66 -0.7 89,325 + GFF2502 0.66 -0.4 89,325 + GFF2502 0.66 +0.1 89,325 + GFF2502 0.66 -0.2 89,326 - GFF2502 0.66 +0.5 89,326 - GFF2502 0.66 +0.2 89,326 - GFF2502 0.66 +1.0 89,326 - GFF2502 0.66 -0.6 89,376 + GFF2502 0.70 -0.7 89,646 + GFF2502 0.87 -0.2 89,646 + GFF2502 0.87 -1.6 89,646 + GFF2502 0.87 -0.8 89,646 + GFF2502 0.87 +1.8 89,646 + GFF2502 0.87 -0.7 89,646 + GFF2502 0.87 +0.8 89,646 + GFF2502 0.87 -1.2 89,646 + GFF2502 0.87 -0.0 89,646 + GFF2502 0.87 -0.9 89,647 - GFF2502 0.87 -1.6 89,647 - GFF2502 0.87 -0.6 89,647 - GFF2502 0.87 +0.3 89,647 - GFF2502 0.87 -0.5 89,647 - GFF2502 0.87 +0.9 89,647 - GFF2502 0.87 -0.3 89,742 + -0.7 89,742 + +0.1 89,742 + +0.2 89,742 + +0.8 89,742 + -0.8 89,742 + -0.3 89,743 - -0.9 89,743 - +0.1 89,743 - +0.8 89,743 - -0.0 89,937 + +1.0 89,938 - +0.5 89,938 - +0.1 89,938 - +0.4
Or see this region's nucleotide sequence