Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2258

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
1,140,656	+				-0.2
1,140,657	-				-1.4
1,140,657	-				-1.2
1,140,657	-				-0.6
1,140,743	+				-0.1
1,140,744	-				+0.2
1,140,847	+				-1.4
1,140,847	+				+0.4
1,140,847	+				+0.1
1,140,847	+				-1.0
1,140,848	-				+0.2
1,141,561	+				+0.0
1,141,561	+				+0.2
1,141,561	+				-0.3
1,141,561	+				-0.3
1,141,562	-				+0.0
1,141,562	-				-0.0
1,141,562	-				+0.3
1,142,076	+		GFF2258	0.52	-0.6
1,142,077	-		GFF2258	0.52	-0.1
1,142,777	+		GFF2259	0.21	-0.1
1,142,777	+		GFF2259	0.21	+0.2
1,142,777	+		GFF2259	0.21	+0.3
1,142,778	-		GFF2259	0.22	-1.5
1,142,778	-		GFF2259	0.22	-0.5
1,143,138	-		GFF2259	0.46	+1.0
1,143,149	+		GFF2259	0.47	-0.3
1,143,239	+		GFF2259	0.53	-0.2
1,143,239	+		GFF2259	0.53	-0.2
1,143,239	+		GFF2259	0.53	-0.6
1,143,239	+		GFF2259	0.53	+0.9
1,143,239	+		GFF2259	0.53	-0.2
1,143,240	-		GFF2259	0.53	+0.4
1,143,240	-		GFF2259	0.53	+0.1
1,143,240	-		GFF2259	0.53	+0.0
1,143,240	-		GFF2259	0.53	+0.6
1,143,269	+		GFF2259	0.55	-0.3
1,143,270	-		GFF2259	0.55	+0.4
1,143,270	-		GFF2259	0.55	-0.2
1,143,270	-		GFF2259	0.55	+0.9