Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2225

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
1,110,419	-				-0.1
1,110,622	+		GFF2223	0.23	+0.6
1,110,622	+		GFF2223	0.23	+0.5
1,110,623	-		GFF2223	0.24	+0.1
1,110,661	+		GFF2223	0.31	+0.0
1,110,662	-		GFF2223	0.31	-0.7
1,110,662	-		GFF2223	0.31	+0.5
1,110,662	-		GFF2223	0.31	-1.3
1,110,662	-		GFF2223	0.31	-0.7
1,111,573	-		GFF2225	0.35	+0.3
1,111,756	-		GFF2225	0.62	+0.0
1,112,443	+		GFF2227	0.11	+0.1
1,112,584	+		GFF2227	0.31	-0.1
1,112,584	+		GFF2227	0.31	-0.2
1,112,585	-		GFF2227	0.31	+0.7
1,112,629	+		GFF2227	0.37	-0.6
1,112,630	-		GFF2227	0.37	+0.2
1,112,674	+		GFF2227	0.43	-0.1
1,112,704	+		GFF2227	0.47	+0.2
1,112,705	-		GFF2227	0.48	-0.1
1,112,738	-		GFF2227	0.52	+0.7
1,112,804	-		GFF2227	0.61	+0.4
1,112,836	+		GFF2227	0.66	-0.3
1,112,836	+		GFF2227	0.66	-0.4
1,112,878	+		GFF2227	0.72	-1.0
1,112,878	+		GFF2227	0.72	-0.2
1,112,999	-		GFF2227	0.88	-0.7
1,113,005	-		GFF2227	0.89	-1.6