Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2105 and GFF2106 overlap by 4 nucleotides GFF2106 and GFF2107 overlap by 4 nucleotides GFF2107 and GFF2108 are separated by 2 nucleotides
GFF2105 - L-lactate dehydrogenase (EC 1.1.2.3), at 992,562 to 993,719
GFF2105
GFF2106 - Quinone oxidoreductase (EC 1.6.5.5), at 993,716 to 994,699
GFF2106
GFF2107 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 994,696 to 995,796
GFF2107
GFF2108 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 995,799 to 996,956
GFF2108
Position (kb) 994
995
996 Strain fitness (log2 ratio) -2
-1
0
1 at 993.863 kb on + strand, within GFF2106 at 993.863 kb on + strand, within GFF2106 at 993.863 kb on + strand, within GFF2106 at 993.863 kb on + strand, within GFF2106 at 993.864 kb on - strand, within GFF2106 at 993.864 kb on - strand, within GFF2106 at 993.864 kb on - strand, within GFF2106 at 994.005 kb on - strand, within GFF2106 at 994.127 kb on + strand, within GFF2106 at 994.128 kb on - strand, within GFF2106 at 995.051 kb on + strand, within GFF2107 at 995.051 kb on + strand, within GFF2107 at 995.052 kb on - strand, within GFF2107 at 995.105 kb on + strand, within GFF2107 at 995.105 kb on + strand, within GFF2107 at 995.105 kb on + strand, within GFF2107 at 995.114 kb on + strand, within GFF2107 at 995.115 kb on - strand, within GFF2107 at 995.396 kb on + strand, within GFF2107 at 996.041 kb on - strand, within GFF2108 at 996.451 kb on + strand, within GFF2108 at 996.452 kb on - strand, within GFF2108
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 993,863 + GFF2106 0.15 -0.9 993,863 + GFF2106 0.15 +0.2 993,863 + GFF2106 0.15 -0.5 993,863 + GFF2106 0.15 -0.3 993,864 - GFF2106 0.15 -1.2 993,864 - GFF2106 0.15 +0.4 993,864 - GFF2106 0.15 +0.0 994,005 - GFF2106 0.29 -0.4 994,127 + GFF2106 0.42 -0.3 994,128 - GFF2106 0.42 -0.1 995,051 + GFF2107 0.32 -0.9 995,051 + GFF2107 0.32 -0.2 995,052 - GFF2107 0.32 -2.3 995,105 + GFF2107 0.37 +0.2 995,105 + GFF2107 0.37 -0.1 995,105 + GFF2107 0.37 -0.0 995,114 + GFF2107 0.38 -0.0 995,115 - GFF2107 0.38 -0.1 995,396 + GFF2107 0.64 -0.8 996,041 - GFF2108 0.21 +1.4 996,451 + GFF2108 0.56 -0.0 996,452 - GFF2108 0.56 -0.0
Or see this region's nucleotide sequence