Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2011 and GFF2012 are separated by 92 nucleotides GFF2012 and GFF2013 are separated by 155 nucleotides
GFF2011 - glycoprotein/polysaccharide metabolism, at 886,579 to 887,388
GFF2011
GFF2012 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 887,481 to 889,037
GFF2012
GFF2013 - Chromosome (plasmid) partitioning protein ParB, at 889,193 to 890,119
GFF2013
Position (kb) 887
888
889
890 Strain fitness (log2 ratio) -2
-1
0
1 at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.552 kb on - strand at 886.781 kb on + strand, within GFF2011 at 886.781 kb on + strand, within GFF2011 at 886.781 kb on + strand, within GFF2011 at 886.781 kb on + strand, within GFF2011 at 886.781 kb on + strand, within GFF2011 at 886.781 kb on + strand, within GFF2011 at 886.781 kb on + strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 886.782 kb on - strand, within GFF2011 at 887.012 kb on + strand, within GFF2011 at 887.013 kb on - strand, within GFF2011 at 887.013 kb on - strand, within GFF2011 at 887.013 kb on - strand, within GFF2011 at 887.013 kb on - strand, within GFF2011 at 887.013 kb on - strand, within GFF2011 at 887.030 kb on + strand, within GFF2011 at 887.030 kb on + strand, within GFF2011 at 887.030 kb on + strand, within GFF2011 at 887.030 kb on + strand, within GFF2011 at 887.030 kb on + strand, within GFF2011 at 887.030 kb on + strand, within GFF2011 at 887.030 kb on + strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.031 kb on - strand, within GFF2011 at 887.070 kb on + strand, within GFF2011 at 887.072 kb on + strand, within GFF2011 at 887.072 kb on + strand, within GFF2011 at 887.072 kb on + strand, within GFF2011 at 887.072 kb on + strand, within GFF2011 at 887.073 kb on - strand, within GFF2011 at 887.073 kb on - strand, within GFF2011 at 887.073 kb on - strand, within GFF2011 at 887.073 kb on - strand, within GFF2011 at 887.073 kb on - strand, within GFF2011 at 887.073 kb on - strand, within GFF2011 at 887.273 kb on + strand, within GFF2011 at 887.273 kb on + strand, within GFF2011 at 887.273 kb on + strand, within GFF2011 at 887.273 kb on + strand, within GFF2011 at 887.273 kb on + strand, within GFF2011 at 887.274 kb on - strand, within GFF2011 at 887.274 kb on - strand, within GFF2011 at 887.274 kb on - strand, within GFF2011 at 887.801 kb on - strand, within GFF2012 at 888.415 kb on + strand, within GFF2012 at 888.415 kb on + strand, within GFF2012 at 888.416 kb on - strand, within GFF2012 at 888.416 kb on - strand, within GFF2012 at 888.416 kb on - strand, within GFF2012 at 888.601 kb on + strand, within GFF2012 at 888.601 kb on + strand, within GFF2012 at 888.601 kb on + strand, within GFF2012 at 888.601 kb on + strand, within GFF2012 at 888.601 kb on + strand, within GFF2012 at 888.601 kb on + strand, within GFF2012 at 888.602 kb on - strand, within GFF2012 at 888.602 kb on - strand, within GFF2012 at 888.602 kb on - strand, within GFF2012 at 889.041 kb on + strand at 889.042 kb on - strand at 889.042 kb on - strand at 889.090 kb on - strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.121 kb on + strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 886,510 + -1.5 886,510 + +0.8 886,510 + +1.1 886,510 + -0.2 886,510 + -0.4 886,510 + -0.3 886,510 + +0.4 886,510 + -0.3 886,510 + -0.9 886,510 + -2.5 886,510 + -0.4 886,511 - +0.6 886,511 - -0.1 886,511 - +0.6 886,511 - -1.1 886,511 - +0.5 886,511 - -0.2 886,511 - -0.0 886,511 - +0.2 886,511 - -0.1 886,511 - -0.8 886,511 - +0.6 886,511 - +0.2 886,511 - +0.0 886,511 - -0.9 886,552 - +0.8 886,781 + GFF2011 0.25 -0.4 886,781 + GFF2011 0.25 +0.4 886,781 + GFF2011 0.25 +1.0 886,781 + GFF2011 0.25 -0.4 886,781 + GFF2011 0.25 -1.7 886,781 + GFF2011 0.25 +0.7 886,781 + GFF2011 0.25 -0.1 886,782 - GFF2011 0.25 -0.1 886,782 - GFF2011 0.25 -0.6 886,782 - GFF2011 0.25 -0.0 886,782 - GFF2011 0.25 -0.9 886,782 - GFF2011 0.25 -0.1 886,782 - GFF2011 0.25 +0.2 886,782 - GFF2011 0.25 -0.1 886,782 - GFF2011 0.25 -0.4 886,782 - GFF2011 0.25 -0.3 886,782 - GFF2011 0.25 -0.3 886,782 - GFF2011 0.25 -0.3 887,012 + GFF2011 0.53 +1.0 887,013 - GFF2011 0.54 -0.1 887,013 - GFF2011 0.54 -1.6 887,013 - GFF2011 0.54 +0.1 887,013 - GFF2011 0.54 -1.2 887,013 - GFF2011 0.54 -0.1 887,030 + GFF2011 0.56 +0.6 887,030 + GFF2011 0.56 +0.0 887,030 + GFF2011 0.56 +0.3 887,030 + GFF2011 0.56 +0.2 887,030 + GFF2011 0.56 -0.3 887,030 + GFF2011 0.56 +0.1 887,030 + GFF2011 0.56 -0.6 887,031 - GFF2011 0.56 -0.3 887,031 - GFF2011 0.56 -0.6 887,031 - GFF2011 0.56 +0.8 887,031 - GFF2011 0.56 -0.0 887,031 - GFF2011 0.56 +1.4 887,031 - GFF2011 0.56 +0.4 887,031 - GFF2011 0.56 -0.1 887,031 - GFF2011 0.56 +0.6 887,031 - GFF2011 0.56 -0.9 887,070 + GFF2011 0.61 -0.6 887,072 + GFF2011 0.61 +0.2 887,072 + GFF2011 0.61 +1.4 887,072 + GFF2011 0.61 -0.4 887,072 + GFF2011 0.61 -1.3 887,073 - GFF2011 0.61 -0.0 887,073 - GFF2011 0.61 -0.1 887,073 - GFF2011 0.61 -1.7 887,073 - GFF2011 0.61 -0.1 887,073 - GFF2011 0.61 +0.3 887,073 - GFF2011 0.61 -0.2 887,273 + GFF2011 0.86 -0.3 887,273 + GFF2011 0.86 -0.6 887,273 + GFF2011 0.86 -0.6 887,273 + GFF2011 0.86 +0.9 887,273 + GFF2011 0.86 -1.5 887,274 - GFF2011 0.86 -0.5 887,274 - GFF2011 0.86 +0.8 887,274 - GFF2011 0.86 -0.1 887,801 - GFF2012 0.21 -0.6 888,415 + GFF2012 0.60 +1.0 888,415 + GFF2012 0.60 -0.6 888,416 - GFF2012 0.60 -0.4 888,416 - GFF2012 0.60 +0.4 888,416 - GFF2012 0.60 -0.0 888,601 + GFF2012 0.72 +0.2 888,601 + GFF2012 0.72 +0.2 888,601 + GFF2012 0.72 +0.4 888,601 + GFF2012 0.72 +0.1 888,601 + GFF2012 0.72 +0.3 888,601 + GFF2012 0.72 +0.8 888,602 - GFF2012 0.72 -0.4 888,602 - GFF2012 0.72 +0.9 888,602 - GFF2012 0.72 -0.3 889,041 + +0.8 889,042 - +0.2 889,042 - -1.0 889,090 - -0.0 889,120 + -0.2 889,120 + -0.6 889,120 + -2.3 889,120 + +0.4 889,120 + +0.2 889,120 + +0.9 889,120 + +0.1 889,120 + +0.1 889,120 + +0.0 889,120 + -1.5 889,120 + +1.2 889,120 + -0.4 889,120 + +0.5 889,120 + -0.1 889,120 + +0.5 889,120 + -0.7 889,120 + -0.1 889,121 + -0.6 889,121 - +0.2 889,121 - -0.0 889,121 - +0.3 889,121 - +0.4 889,121 - +0.7 889,121 - -0.5 889,121 - +0.3 889,121 - -0.6 889,121 - -0.1 889,121 - +1.1 889,121 - +0.1 889,121 - -0.3 889,121 - -0.4
Or see this region's nucleotide sequence