Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1976

Experiment: Ying_all64 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1975 and GFF1976 are separated by 64 nucleotidesGFF1976 and GFF1977 are separated by 4 nucleotidesGFF1977 and GFF1978 are separated by 37 nucleotides GFF1975 - mandelate racemase/muconate lactonizing enzyme family protein, at 849,946 to 851,154 GFF1975 GFF1976 - Transcriptional regulator, at 851,219 to 852,163 GFF1976 GFF1977 - peptidase M14, carboxypeptidase A, at 852,168 to 853,046 GFF1977 GFF1978 - BEC protein, at 853,084 to 854,340 GFF1978 Position (kb) 851 852 853Strain fitness (log2 ratio) -3 -2 -1 0 1at 850.226 kb on + strand, within GFF1975at 850.227 kb on - strand, within GFF1975at 850.227 kb on - strand, within GFF1975at 850.227 kb on - strand, within GFF1975at 850.346 kb on + strand, within GFF1975at 850.347 kb on - strand, within GFF1975at 850.347 kb on - strand, within GFF1975at 850.376 kb on + strand, within GFF1975at 850.377 kb on - strand, within GFF1975at 850.403 kb on + strand, within GFF1975at 850.404 kb on - strand, within GFF1975at 850.580 kb on + strand, within GFF1975at 850.584 kb on - strand, within GFF1975at 850.598 kb on + strand, within GFF1975at 850.599 kb on - strand, within GFF1975at 850.646 kb on + strand, within GFF1975at 850.646 kb on + strand, within GFF1975at 850.646 kb on + strand, within GFF1975at 850.646 kb on + strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.647 kb on - strand, within GFF1975at 850.649 kb on + strand, within GFF1975at 850.650 kb on - strand, within GFF1975at 850.700 kb on + strand, within GFF1975at 850.721 kb on + strand, within GFF1975at 850.722 kb on - strand, within GFF1975at 851.051 kb on + strandat 851.051 kb on + strandat 851.051 kb on + strandat 851.051 kb on + strandat 851.051 kb on + strandat 851.051 kb on + strandat 851.052 kb on - strandat 851.052 kb on - strandat 851.052 kb on - strandat 851.052 kb on - strandat 851.196 kb on + strandat 851.196 kb on + strandat 851.196 kb on + strandat 851.196 kb on + strandat 851.196 kb on + strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.202 kb on + strandat 851.202 kb on + strandat 851.202 kb on + strandat 851.202 kb on + strandat 851.202 kb on + strandat 851.203 kb on - strandat 851.203 kb on - strandat 851.203 kb on - strandat 851.203 kb on - strandat 851.678 kb on + strand, within GFF1976at 851.679 kb on - strand, within GFF1976at 851.844 kb on - strand, within GFF1976at 852.352 kb on + strand, within GFF1977at 852.353 kb on - strand, within GFF1977at 852.394 kb on + strand, within GFF1977at 852.394 kb on + strand, within GFF1977at 852.395 kb on - strand, within GFF1977at 852.395 kb on - strand, within GFF1977at 852.395 kb on - strand, within GFF1977at 852.586 kb on + strand, within GFF1977at 852.587 kb on - strand, within GFF1977at 852.587 kb on - strand, within GFF1977at 852.587 kb on - strand, within GFF1977at 852.587 kb on - strand, within GFF1977at 852.850 kb on + strand, within GFF1977at 853.057 kb on + strandat 853.058 kb on - strandat 853.058 kb on - strandat 853.058 kb on - strandat 853.109 kb on + strandat 853.109 kb on + strandat 853.109 kb on + strandat 853.109 kb on + strandat 853.109 kb on + strandat 853.110 kb on - strandat 853.110 kb on - strandat 853.110 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
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850,226 + GFF1975 0.23 -0.2
850,227 - GFF1975 0.23 -1.8
850,227 - GFF1975 0.23 -0.6
850,227 - GFF1975 0.23 -0.3
850,346 + GFF1975 0.33 +1.3
850,347 - GFF1975 0.33 -0.5
850,347 - GFF1975 0.33 +0.3
850,376 + GFF1975 0.36 -0.7
850,377 - GFF1975 0.36 +0.6
850,403 + GFF1975 0.38 +1.5
850,404 - GFF1975 0.38 +0.4
850,580 + GFF1975 0.52 +0.3
850,584 - GFF1975 0.53 -1.6
850,598 + GFF1975 0.54 -0.3
850,599 - GFF1975 0.54 +0.0
850,646 + GFF1975 0.58 -0.5
850,646 + GFF1975 0.58 -0.0
850,646 + GFF1975 0.58 +0.0
850,646 + GFF1975 0.58 -0.4
850,647 - GFF1975 0.58 +0.2
850,647 - GFF1975 0.58 +0.4
850,647 - GFF1975 0.58 -0.0
850,647 - GFF1975 0.58 +0.0
850,647 - GFF1975 0.58 +0.1
850,647 - GFF1975 0.58 -2.8
850,647 - GFF1975 0.58 +0.0
850,647 - GFF1975 0.58 +0.6
850,647 - GFF1975 0.58 +0.6
850,649 + GFF1975 0.58 +0.6
850,650 - GFF1975 0.58 +1.2
850,700 + GFF1975 0.62 -0.4
850,721 + GFF1975 0.64 -0.2
850,722 - GFF1975 0.64 -0.8
851,051 + +0.7
851,051 + -0.5
851,051 + -0.9
851,051 + +0.4
851,051 + +0.7
851,051 + -1.8
851,052 - +0.2
851,052 - +0.2
851,052 - -0.0
851,052 - -0.3
851,196 + +0.0
851,196 + -0.2
851,196 + -0.7
851,196 + -0.5
851,196 + +0.0
851,197 - -0.2
851,197 - -0.2
851,197 - -0.2
851,197 - +0.4
851,197 - +0.8
851,197 - +0.4
851,197 - +0.0
851,197 - -1.5
851,197 - +0.3
851,202 + +0.3
851,202 + +0.6
851,202 + +0.1
851,202 + +0.2
851,202 + -0.8
851,203 - +0.7
851,203 - -0.0
851,203 - -0.0
851,203 - -0.9
851,678 + GFF1976 0.49 -0.8
851,679 - GFF1976 0.49 -0.0
851,844 - GFF1976 0.66 +0.1
852,352 + GFF1977 0.21 +0.6
852,353 - GFF1977 0.21 -1.1
852,394 + GFF1977 0.26 +0.4
852,394 + GFF1977 0.26 +0.8
852,395 - GFF1977 0.26 -0.0
852,395 - GFF1977 0.26 -0.1
852,395 - GFF1977 0.26 -0.4
852,586 + GFF1977 0.48 -0.1
852,587 - GFF1977 0.48 +0.5
852,587 - GFF1977 0.48 +1.2
852,587 - GFF1977 0.48 -0.3
852,587 - GFF1977 0.48 +1.3
852,850 + GFF1977 0.78 -0.2
853,057 + +0.6
853,058 - -0.5
853,058 - -0.1
853,058 - -0.9
853,109 + +0.3
853,109 + -0.3
853,109 + -0.5
853,109 + -1.4
853,109 + +1.1
853,110 - +0.4
853,110 - -0.1
853,110 - -0.3

Or see this region's nucleotide sequence