Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1974

Experiment: Ying_all64 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1973 and GFF1974 are separated by 400 nucleotidesGFF1974 and GFF1975 are separated by 344 nucleotides GFF1973 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 846,211 to 847,563 GFF1973 GFF1974 - Probable hemagglutinin-related transmembrane protein, at 847,964 to 849,601 GFF1974 GFF1975 - mandelate racemase/muconate lactonizing enzyme family protein, at 849,946 to 851,154 GFF1975 Position (kb) 847 848 849 850Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 846.994 kb on + strand, within GFF1973at 846.995 kb on - strand, within GFF1973at 847.039 kb on + strand, within GFF1973at 847.040 kb on - strand, within GFF1973at 847.054 kb on + strand, within GFF1973at 847.054 kb on + strand, within GFF1973at 847.055 kb on - strand, within GFF1973at 847.055 kb on - strand, within GFF1973at 847.055 kb on - strand, within GFF1973at 847.594 kb on - strandat 847.611 kb on + strandat 847.611 kb on + strandat 847.611 kb on + strandat 847.611 kb on + strandat 847.611 kb on + strandat 847.612 kb on - strandat 847.612 kb on - strandat 847.612 kb on - strandat 847.614 kb on - strandat 847.618 kb on + strandat 847.618 kb on + strandat 847.639 kb on + strandat 847.639 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.725 kb on + strandat 847.726 kb on - strandat 847.726 kb on - strandat 847.726 kb on - strandat 847.726 kb on - strandat 847.726 kb on - strandat 847.726 kb on - strandat 847.726 kb on - strandat 847.807 kb on + strandat 847.807 kb on + strandat 847.807 kb on + strandat 847.807 kb on + strandat 847.807 kb on + strandat 847.808 kb on - strandat 847.808 kb on - strandat 847.989 kb on + strandat 847.989 kb on + strandat 847.989 kb on + strandat 847.990 kb on - strandat 847.990 kb on - strandat 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.138 kb on + strand, within GFF1974at 848.139 kb on - strand, within GFF1974at 848.139 kb on - strand, within GFF1974at 848.139 kb on - strand, within GFF1974at 848.139 kb on - strand, within GFF1974at 848.353 kb on + strand, within GFF1974at 848.462 kb on + strand, within GFF1974at 848.463 kb on - strand, within GFF1974at 848.500 kb on + strand, within GFF1974at 848.585 kb on + strand, within GFF1974at 848.585 kb on + strand, within GFF1974at 848.585 kb on + strand, within GFF1974at 848.585 kb on + strand, within GFF1974at 848.585 kb on + strand, within GFF1974at 848.585 kb on + strand, within GFF1974at 848.585 kb on + strand, within GFF1974at 848.585 kb on + strand, within GFF1974at 848.585 kb on + strand, within GFF1974at 848.585 kb on + strand, within GFF1974at 848.585 kb on + strand, within GFF1974at 848.585 kb on + strand, within GFF1974at 848.585 kb on + strand, within GFF1974at 848.585 kb on + strand, within GFF1974at 848.586 kb on + strand, within GFF1974at 848.586 kb on - strand, within GFF1974at 848.586 kb on - strand, within GFF1974at 848.586 kb on - strand, within GFF1974at 848.586 kb on - strand, within GFF1974at 848.586 kb on - strand, within GFF1974at 848.586 kb on - strand, within GFF1974at 848.657 kb on + strand, within GFF1974at 848.657 kb on + strand, within GFF1974at 848.657 kb on + strand, within GFF1974at 848.657 kb on + strand, within GFF1974at 848.657 kb on + strand, within GFF1974at 848.657 kb on + strand, within GFF1974at 848.657 kb on + strand, within GFF1974at 848.657 kb on + strand, within GFF1974at 848.658 kb on - strand, within GFF1974at 848.658 kb on - strand, within GFF1974at 848.658 kb on - strand, within GFF1974at 848.658 kb on - strand, within GFF1974at 848.658 kb on - strand, within GFF1974at 848.695 kb on + strand, within GFF1974at 848.695 kb on + strand, within GFF1974at 848.696 kb on - strand, within GFF1974at 848.705 kb on + strand, within GFF1974at 848.705 kb on + strand, within GFF1974at 848.705 kb on + strand, within GFF1974at 848.705 kb on + strand, within GFF1974at 848.706 kb on - strand, within GFF1974at 848.706 kb on - strand, within GFF1974at 848.706 kb on - strand, within GFF1974at 848.706 kb on - strand, within GFF1974at 848.749 kb on - strand, within GFF1974at 848.780 kb on + strand, within GFF1974at 848.781 kb on - strand, within GFF1974at 848.796 kb on - strand, within GFF1974at 848.861 kb on + strand, within GFF1974at 848.861 kb on + strand, within GFF1974at 848.861 kb on + strand, within GFF1974at 848.861 kb on + strand, within GFF1974at 848.861 kb on + strand, within GFF1974at 848.862 kb on - strand, within GFF1974at 848.862 kb on - strand, within GFF1974at 848.862 kb on - strand, within GFF1974at 848.882 kb on + strand, within GFF1974at 848.882 kb on + strand, within GFF1974at 848.883 kb on - strand, within GFF1974at 848.883 kb on - strand, within GFF1974at 848.883 kb on - strand, within GFF1974at 848.883 kb on - strand, within GFF1974at 848.957 kb on + strand, within GFF1974at 848.957 kb on + strand, within GFF1974at 848.958 kb on - strand, within GFF1974at 848.958 kb on - strand, within GFF1974at 849.095 kb on + strand, within GFF1974at 849.095 kb on + strand, within GFF1974at 849.119 kb on + strand, within GFF1974at 849.120 kb on - strand, within GFF1974at 849.158 kb on + strand, within GFF1974at 849.158 kb on + strand, within GFF1974at 849.179 kb on + strand, within GFF1974at 849.179 kb on + strand, within GFF1974at 849.179 kb on + strand, within GFF1974at 849.179 kb on + strand, within GFF1974at 849.179 kb on + strand, within GFF1974at 849.179 kb on + strand, within GFF1974at 849.179 kb on + strand, within GFF1974at 849.180 kb on - strand, within GFF1974at 849.180 kb on - strand, within GFF1974at 849.180 kb on - strand, within GFF1974at 849.180 kb on - strand, within GFF1974at 849.180 kb on - strand, within GFF1974at 849.180 kb on - strand, within GFF1974at 849.180 kb on - strand, within GFF1974at 849.186 kb on + strand, within GFF1974at 849.487 kb on + strandat 849.487 kb on + strandat 849.488 kb on - strandat 849.488 kb on - strandat 849.509 kb on - strandat 849.545 kb on + strandat 849.545 kb on + strandat 849.546 kb on - strandat 850.028 kb on + strandat 850.028 kb on + strandat 850.028 kb on + strandat 850.029 kb on - strandat 850.029 kb on - strandat 850.029 kb on - strandat 850.029 kb on - strandat 850.029 kb on - strandat 850.088 kb on + strand, within GFF1975at 850.089 kb on - strand, within GFF1975at 850.089 kb on - strand, within GFF1975at 850.211 kb on + strand, within GFF1975at 850.212 kb on - strand, within GFF1975at 850.226 kb on + strand, within GFF1975at 850.227 kb on - strand, within GFF1975at 850.227 kb on - strand, within GFF1975at 850.227 kb on - strand, within GFF1975at 850.346 kb on + strand, within GFF1975at 850.347 kb on - strand, within GFF1975at 850.347 kb on - strand, within GFF1975at 850.376 kb on + strand, within GFF1975at 850.377 kb on - strand, within GFF1975at 850.403 kb on + strand, within GFF1975at 850.404 kb on - strand, within GFF1975at 850.580 kb on + strand, within GFF1975at 850.584 kb on - strand, within GFF1975at 850.598 kb on + strand, within GFF1975at 850.599 kb on - strand, within GFF1975

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
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846,994 + GFF1973 0.58 -0.1
846,995 - GFF1973 0.58 -0.1
847,039 + GFF1973 0.61 -0.8
847,040 - GFF1973 0.61 -0.5
847,054 + GFF1973 0.62 -0.4
847,054 + GFF1973 0.62 +1.5
847,055 - GFF1973 0.62 -0.5
847,055 - GFF1973 0.62 +0.9
847,055 - GFF1973 0.62 -0.1
847,594 - +0.9
847,611 + -0.3
847,611 + +0.3
847,611 + -1.0
847,611 + -0.0
847,611 + -0.6
847,612 - +0.1
847,612 - -0.4
847,612 - +0.4
847,614 - -0.1
847,618 + +0.0
847,618 + +0.1
847,639 + +0.9
847,639 + +0.8
847,725 + +0.1
847,725 + +0.4
847,725 + -0.5
847,725 + +0.1
847,725 + -0.2
847,725 + +0.4
847,725 + +0.2
847,725 + -0.3
847,725 + +0.3
847,725 + -0.2
847,725 + -0.0
847,726 - +0.1
847,726 - +0.2
847,726 - +0.9
847,726 - -1.1
847,726 - +0.0
847,726 - +0.7
847,726 - -0.1
847,807 + +0.8
847,807 + +0.8
847,807 + -0.2
847,807 + -0.0
847,807 + +0.5
847,808 - +0.5
847,808 - +0.1
847,989 + +0.5
847,989 + +0.2
847,989 + -0.3
847,990 - -0.2
847,990 - +0.7
848,138 + GFF1974 0.11 +0.0
848,138 + GFF1974 0.11 -0.1
848,138 + GFF1974 0.11 +0.1
848,138 + GFF1974 0.11 +0.2
848,138 + GFF1974 0.11 -0.4
848,138 + GFF1974 0.11 -0.5
848,138 + GFF1974 0.11 +0.4
848,138 + GFF1974 0.11 -0.2
848,138 + GFF1974 0.11 +0.3
848,138 + GFF1974 0.11 +0.5
848,138 + GFF1974 0.11 -0.0
848,139 - GFF1974 0.11 -0.5
848,139 - GFF1974 0.11 +0.6
848,139 - GFF1974 0.11 +0.5
848,139 - GFF1974 0.11 +0.2
848,353 + GFF1974 0.24 -0.1
848,462 + GFF1974 0.30 -0.2
848,463 - GFF1974 0.30 -1.4
848,500 + GFF1974 0.33 -0.3
848,585 + GFF1974 0.38 +0.0
848,585 + GFF1974 0.38 -0.4
848,585 + GFF1974 0.38 +0.3
848,585 + GFF1974 0.38 -3.2
848,585 + GFF1974 0.38 +0.0
848,585 + GFF1974 0.38 -0.1
848,585 + GFF1974 0.38 -0.4
848,585 + GFF1974 0.38 -1.1
848,585 + GFF1974 0.38 +0.1
848,585 + GFF1974 0.38 -0.3
848,585 + GFF1974 0.38 +0.8
848,585 + GFF1974 0.38 -1.3
848,585 + GFF1974 0.38 -2.2
848,585 + GFF1974 0.38 +0.2
848,586 + GFF1974 0.38 +0.7
848,586 - GFF1974 0.38 -0.7
848,586 - GFF1974 0.38 -0.7
848,586 - GFF1974 0.38 -0.2
848,586 - GFF1974 0.38 +0.2
848,586 - GFF1974 0.38 +0.2
848,586 - GFF1974 0.38 -0.5
848,657 + GFF1974 0.42 +0.2
848,657 + GFF1974 0.42 +0.1
848,657 + GFF1974 0.42 +0.1
848,657 + GFF1974 0.42 -1.1
848,657 + GFF1974 0.42 +0.7
848,657 + GFF1974 0.42 -2.0
848,657 + GFF1974 0.42 +0.3
848,657 + GFF1974 0.42 -0.3
848,658 - GFF1974 0.42 -0.3
848,658 - GFF1974 0.42 +0.5
848,658 - GFF1974 0.42 -0.4
848,658 - GFF1974 0.42 +0.3
848,658 - GFF1974 0.42 +0.2
848,695 + GFF1974 0.45 +0.9
848,695 + GFF1974 0.45 -0.0
848,696 - GFF1974 0.45 +0.1
848,705 + GFF1974 0.45 +0.0
848,705 + GFF1974 0.45 -0.1
848,705 + GFF1974 0.45 +0.4
848,705 + GFF1974 0.45 +0.7
848,706 - GFF1974 0.45 -0.5
848,706 - GFF1974 0.45 +0.1
848,706 - GFF1974 0.45 -0.8
848,706 - GFF1974 0.45 +0.9
848,749 - GFF1974 0.48 +0.0
848,780 + GFF1974 0.50 +0.6
848,781 - GFF1974 0.50 -0.3
848,796 - GFF1974 0.51 -0.5
848,861 + GFF1974 0.55 +0.3
848,861 + GFF1974 0.55 +0.6
848,861 + GFF1974 0.55 -0.3
848,861 + GFF1974 0.55 +0.6
848,861 + GFF1974 0.55 +1.6
848,862 - GFF1974 0.55 +0.8
848,862 - GFF1974 0.55 +2.8
848,862 - GFF1974 0.55 -0.5
848,882 + GFF1974 0.56 +0.5
848,882 + GFF1974 0.56 +0.8
848,883 - GFF1974 0.56 -0.8
848,883 - GFF1974 0.56 -0.5
848,883 - GFF1974 0.56 +0.1
848,883 - GFF1974 0.56 -1.1
848,957 + GFF1974 0.61 -0.3
848,957 + GFF1974 0.61 +0.4
848,958 - GFF1974 0.61 -0.2
848,958 - GFF1974 0.61 +0.0
849,095 + GFF1974 0.69 -1.2
849,095 + GFF1974 0.69 +0.7
849,119 + GFF1974 0.71 +0.4
849,120 - GFF1974 0.71 -0.2
849,158 + GFF1974 0.73 +0.2
849,158 + GFF1974 0.73 +0.5
849,179 + GFF1974 0.74 -0.0
849,179 + GFF1974 0.74 +0.0
849,179 + GFF1974 0.74 +0.6
849,179 + GFF1974 0.74 +0.0
849,179 + GFF1974 0.74 +1.1
849,179 + GFF1974 0.74 +0.4
849,179 + GFF1974 0.74 +0.0
849,180 - GFF1974 0.74 +0.1
849,180 - GFF1974 0.74 -0.1
849,180 - GFF1974 0.74 -0.6
849,180 - GFF1974 0.74 +0.6
849,180 - GFF1974 0.74 -0.1
849,180 - GFF1974 0.74 +1.7
849,180 - GFF1974 0.74 +0.7
849,186 + GFF1974 0.75 -0.9
849,487 + -0.1
849,487 + -0.7
849,488 - +0.8
849,488 - -0.1
849,509 - +1.7
849,545 + -0.5
849,545 + -0.2
849,546 - +0.1
850,028 + -0.2
850,028 + -1.2
850,028 + +0.3
850,029 - +0.2
850,029 - +0.0
850,029 - -0.6
850,029 - +0.3
850,029 - -0.1
850,088 + GFF1975 0.12 +0.7
850,089 - GFF1975 0.12 +0.2
850,089 - GFF1975 0.12 +0.4
850,211 + GFF1975 0.22 -0.3
850,212 - GFF1975 0.22 +0.1
850,226 + GFF1975 0.23 -0.2
850,227 - GFF1975 0.23 -1.8
850,227 - GFF1975 0.23 -0.6
850,227 - GFF1975 0.23 -0.3
850,346 + GFF1975 0.33 +1.3
850,347 - GFF1975 0.33 -0.5
850,347 - GFF1975 0.33 +0.3
850,376 + GFF1975 0.36 -0.7
850,377 - GFF1975 0.36 +0.6
850,403 + GFF1975 0.38 +1.5
850,404 - GFF1975 0.38 +0.4
850,580 + GFF1975 0.52 +0.3
850,584 - GFF1975 0.53 -1.6
850,598 + GFF1975 0.54 -0.3
850,599 - GFF1975 0.54 +0.0

Or see this region's nucleotide sequence