Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1945 and GFF1946 are separated by 49 nucleotides GFF1946 and GFF1947 are separated by 1 nucleotides GFF1947 and GFF1948 are separated by 135 nucleotides GFF1948 and GFF1949 overlap by 4 nucleotides
GFF1945 - Cyanate ABC transporter, ATP-binding protein, at 818,177 to 818,974
GFF1945
GFF1946 - Cyanate ABC transporter, permease protein, at 819,024 to 819,887
GFF1946
GFF1947 - Cyanate ABC transporter, substrate binding protein, at 819,889 to 821,310
GFF1947
GFF1948 - Transcriptional regulatory protein UhpA, at 821,446 to 822,129
GFF1948
GFF1949 - Sensory box histidine kinase, at 822,126 to 823,340
GFF1949
Position (kb) 819
820
821
822 Strain fitness (log2 ratio) -2
-1
0
1 at 818.931 kb on + strand at 819.035 kb on - strand at 819.035 kb on - strand at 819.157 kb on + strand, within GFF1946 at 819.158 kb on - strand, within GFF1946 at 819.433 kb on + strand, within GFF1946 at 819.641 kb on - strand, within GFF1946 at 819.641 kb on - strand, within GFF1946 at 819.927 kb on - strand at 819.927 kb on - strand at 819.981 kb on - strand at 820.044 kb on - strand, within GFF1947 at 820.070 kb on + strand, within GFF1947 at 820.251 kb on - strand, within GFF1947 at 820.251 kb on - strand, within GFF1947 at 820.335 kb on - strand, within GFF1947 at 820.592 kb on + strand, within GFF1947 at 820.592 kb on + strand, within GFF1947 at 820.593 kb on - strand, within GFF1947 at 820.595 kb on + strand, within GFF1947 at 820.595 kb on + strand, within GFF1947 at 820.623 kb on - strand, within GFF1947 at 820.811 kb on + strand, within GFF1947 at 820.811 kb on + strand, within GFF1947 at 820.812 kb on - strand, within GFF1947 at 820.893 kb on - strand, within GFF1947 at 821.151 kb on - strand, within GFF1947 at 821.288 kb on + strand at 821.288 kb on + strand at 821.288 kb on + strand at 821.431 kb on - strand at 821.540 kb on + strand, within GFF1948 at 821.628 kb on - strand, within GFF1948 at 821.786 kb on + strand, within GFF1948 at 821.786 kb on + strand, within GFF1948 at 821.822 kb on + strand, within GFF1948 at 821.822 kb on + strand, within GFF1948 at 821.822 kb on + strand, within GFF1948 at 821.823 kb on - strand, within GFF1948 at 821.823 kb on - strand, within GFF1948 at 821.823 kb on - strand, within GFF1948 at 821.837 kb on + strand, within GFF1948 at 821.837 kb on + strand, within GFF1948 at 821.838 kb on - strand, within GFF1948 at 822.256 kb on + strand, within GFF1949
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 818,931 + -0.4 819,035 - -1.1 819,035 - -0.8 819,157 + GFF1946 0.15 +0.3 819,158 - GFF1946 0.16 +0.0 819,433 + GFF1946 0.47 -0.1 819,641 - GFF1946 0.71 +1.4 819,641 - GFF1946 0.71 -0.3 819,927 - +1.5 819,927 - +0.1 819,981 - +0.4 820,044 - GFF1947 0.11 +0.2 820,070 + GFF1947 0.13 -1.3 820,251 - GFF1947 0.25 -0.0 820,251 - GFF1947 0.25 -0.0 820,335 - GFF1947 0.31 +0.4 820,592 + GFF1947 0.49 -0.3 820,592 + GFF1947 0.49 -0.7 820,593 - GFF1947 0.50 +1.2 820,595 + GFF1947 0.50 +0.7 820,595 + GFF1947 0.50 -0.2 820,623 - GFF1947 0.52 +0.7 820,811 + GFF1947 0.65 +0.1 820,811 + GFF1947 0.65 -0.1 820,812 - GFF1947 0.65 +0.2 820,893 - GFF1947 0.71 +0.1 821,151 - GFF1947 0.89 -1.3 821,288 + +0.2 821,288 + -0.3 821,288 + +0.2 821,431 - -0.8 821,540 + GFF1948 0.14 +0.2 821,628 - GFF1948 0.27 +0.4 821,786 + GFF1948 0.50 -1.1 821,786 + GFF1948 0.50 +0.5 821,822 + GFF1948 0.55 -1.6 821,822 + GFF1948 0.55 +0.2 821,822 + GFF1948 0.55 +0.1 821,823 - GFF1948 0.55 -2.2 821,823 - GFF1948 0.55 -0.2 821,823 - GFF1948 0.55 +0.1 821,837 + GFF1948 0.57 -0.0 821,837 + GFF1948 0.57 +0.7 821,838 - GFF1948 0.57 +0.3 822,256 + GFF1949 0.11 +1.0
Or see this region's nucleotide sequence