Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1931 and GFF1932 are separated by 36 nucleotides GFF1932 and GFF1933 overlap by 4 nucleotides
GFF1931 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 806,511 to 807,497
GFF1931
GFF1932 - Bll5738 protein, at 807,534 to 808,109
GFF1932
GFF1933 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 808,106 to 809,257
GFF1933
Position (kb) 807
808
809 Strain fitness (log2 ratio) -2
-1
0
1 at 806.754 kb on + strand, within GFF1931 at 806.754 kb on + strand, within GFF1931 at 806.755 kb on - strand, within GFF1931 at 806.755 kb on - strand, within GFF1931 at 806.755 kb on - strand, within GFF1931 at 806.755 kb on - strand, within GFF1931 at 806.755 kb on - strand, within GFF1931 at 806.856 kb on + strand, within GFF1931 at 806.856 kb on + strand, within GFF1931 at 806.901 kb on + strand, within GFF1931 at 806.905 kb on - strand, within GFF1931 at 807.148 kb on - strand, within GFF1931 at 807.148 kb on - strand, within GFF1931 at 807.208 kb on - strand, within GFF1931 at 807.309 kb on + strand, within GFF1931 at 807.309 kb on + strand, within GFF1931 at 807.310 kb on - strand, within GFF1931 at 807.310 kb on - strand, within GFF1931 at 807.310 kb on - strand, within GFF1931 at 807.315 kb on + strand, within GFF1931 at 807.316 kb on - strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.391 kb on + strand, within GFF1931 at 807.391 kb on - strand, within GFF1931 at 807.391 kb on - strand, within GFF1931 at 807.391 kb on - strand, within GFF1931 at 807.588 kb on + strand at 807.588 kb on + strand at 807.696 kb on + strand, within GFF1932 at 808.045 kb on - strand, within GFF1932 at 808.045 kb on - strand, within GFF1932 at 808.406 kb on + strand, within GFF1933 at 808.406 kb on + strand, within GFF1933 at 808.406 kb on + strand, within GFF1933 at 808.406 kb on + strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.512 kb on - strand, within GFF1933 at 808.754 kb on + strand, within GFF1933 at 808.755 kb on - strand, within GFF1933 at 808.755 kb on - strand, within GFF1933 at 808.755 kb on - strand, within GFF1933
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 806,754 + GFF1931 0.25 +1.1 806,754 + GFF1931 0.25 -0.2 806,755 - GFF1931 0.25 -0.0 806,755 - GFF1931 0.25 -0.1 806,755 - GFF1931 0.25 +0.1 806,755 - GFF1931 0.25 +0.5 806,755 - GFF1931 0.25 +0.7 806,856 + GFF1931 0.35 +1.1 806,856 + GFF1931 0.35 -0.3 806,901 + GFF1931 0.40 -1.1 806,905 - GFF1931 0.40 +0.1 807,148 - GFF1931 0.65 +0.0 807,148 - GFF1931 0.65 +0.1 807,208 - GFF1931 0.71 -0.7 807,309 + GFF1931 0.81 -0.0 807,309 + GFF1931 0.81 +0.1 807,310 - GFF1931 0.81 +0.1 807,310 - GFF1931 0.81 +0.4 807,310 - GFF1931 0.81 -1.6 807,315 + GFF1931 0.81 +0.4 807,316 - GFF1931 0.82 +0.6 807,390 + GFF1931 0.89 -0.5 807,390 + GFF1931 0.89 +0.7 807,390 + GFF1931 0.89 +0.5 807,390 + GFF1931 0.89 -0.1 807,390 + GFF1931 0.89 +0.1 807,390 + GFF1931 0.89 +0.3 807,391 + GFF1931 0.89 +0.2 807,391 - GFF1931 0.89 -0.5 807,391 - GFF1931 0.89 -0.7 807,391 - GFF1931 0.89 +0.1 807,588 + +0.1 807,588 + +1.0 807,696 + GFF1932 0.28 +0.2 808,045 - GFF1932 0.89 +1.0 808,045 - GFF1932 0.89 +1.0 808,406 + GFF1933 0.26 +0.7 808,406 + GFF1933 0.26 -0.1 808,406 + GFF1933 0.26 -0.2 808,406 + GFF1933 0.26 -1.1 808,407 - GFF1933 0.26 +0.9 808,407 - GFF1933 0.26 +0.3 808,407 - GFF1933 0.26 -1.7 808,407 - GFF1933 0.26 +0.2 808,407 - GFF1933 0.26 -0.3 808,407 - GFF1933 0.26 +1.3 808,512 - GFF1933 0.35 -0.8 808,754 + GFF1933 0.56 +0.3 808,755 - GFF1933 0.56 -2.5 808,755 - GFF1933 0.56 -0.1 808,755 - GFF1933 0.56 +0.1
Or see this region's nucleotide sequence