Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1705 and GFF1706 are separated by 22 nucleotides GFF1706 and GFF1707 are separated by 4 nucleotides GFF1707 and GFF1708 are separated by 11 nucleotides GFF1708 and GFF1709 are separated by 11 nucleotides GFF1709 and GFF1710 are separated by 18 nucleotides
GFF1705 - 2-hydroxychromene-2-carboxylate isomerase, at 561,874 to 562,548
GFF1705
GFF1706 - YbaK/prolyl-tRNA synthetase associated region, at 562,571 to 562,798
GFF1706
GFF1707 - Uncharacterized protein SCO3165, at 562,803 to 563,312
GFF1707
GFF1708 - Homoserine/homoserine lactone efflux protein, at 563,324 to 563,965
GFF1708
GFF1709 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 563,977 to 564,885
GFF1709
GFF1710 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 564,904 to 565,824
GFF1710
Position (kb) 563
564 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 562.362 kb on - strand, within GFF1705 at 562.362 kb on - strand, within GFF1705 at 562.509 kb on - strand at 562.526 kb on + strand at 562.527 kb on - strand at 562.527 kb on - strand at 562.649 kb on + strand, within GFF1706 at 563.454 kb on + strand, within GFF1708 at 563.454 kb on + strand, within GFF1708 at 563.455 kb on - strand, within GFF1708 at 563.455 kb on - strand, within GFF1708 at 563.722 kb on - strand, within GFF1708 at 563.722 kb on - strand, within GFF1708 at 563.865 kb on + strand, within GFF1708 at 563.865 kb on + strand, within GFF1708 at 563.865 kb on + strand, within GFF1708 at 563.866 kb on - strand, within GFF1708 at 563.940 kb on + strand at 563.940 kb on + strand at 563.940 kb on + strand at 563.940 kb on + strand at 563.940 kb on + strand at 563.941 kb on - strand at 563.941 kb on - strand at 563.941 kb on - strand at 563.941 kb on - strand at 563.941 kb on - strand at 563.941 kb on - strand at 563.941 kb on - strand at 563.941 kb on - strand at 564.050 kb on + strand at 564.050 kb on + strand at 564.050 kb on + strand at 564.050 kb on + strand at 564.050 kb on + strand at 564.050 kb on + strand at 564.050 kb on + strand at 564.051 kb on - strand at 564.116 kb on + strand, within GFF1709 at 564.116 kb on + strand, within GFF1709 at 564.116 kb on + strand, within GFF1709 at 564.116 kb on + strand, within GFF1709 at 564.117 kb on - strand, within GFF1709 at 564.117 kb on - strand, within GFF1709 at 564.161 kb on + strand, within GFF1709 at 564.251 kb on + strand, within GFF1709 at 564.251 kb on + strand, within GFF1709 at 564.252 kb on - strand, within GFF1709 at 564.252 kb on - strand, within GFF1709 at 564.252 kb on - strand, within GFF1709 at 564.252 kb on - strand, within GFF1709 at 564.290 kb on + strand, within GFF1709 at 564.405 kb on - strand, within GFF1709 at 564.405 kb on - strand, within GFF1709 at 564.405 kb on - strand, within GFF1709 at 564.438 kb on - strand, within GFF1709 at 564.626 kb on + strand, within GFF1709 at 564.626 kb on + strand, within GFF1709 at 564.626 kb on + strand, within GFF1709 at 564.737 kb on + strand, within GFF1709 at 564.737 kb on + strand, within GFF1709 at 564.737 kb on + strand, within GFF1709 at 564.737 kb on + strand, within GFF1709 at 564.737 kb on + strand, within GFF1709 at 564.737 kb on + strand, within GFF1709 at 564.738 kb on - strand, within GFF1709 at 564.738 kb on - strand, within GFF1709 at 564.738 kb on - strand, within GFF1709 at 564.738 kb on - strand, within GFF1709 at 564.738 kb on - strand, within GFF1709 at 564.738 kb on - strand, within GFF1709 at 564.738 kb on - strand, within GFF1709 at 564.738 kb on - strand, within GFF1709 at 564.738 kb on - strand, within GFF1709 at 564.738 kb on - strand, within GFF1709 at 564.909 kb on - strand at 564.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 562,362 - GFF1705 0.72 -1.0 562,362 - GFF1705 0.72 -1.7 562,509 - -1.2 562,526 + -0.4 562,527 - +0.7 562,527 - -0.9 562,649 + GFF1706 0.34 +0.2 563,454 + GFF1708 0.20 -0.3 563,454 + GFF1708 0.20 -0.4 563,455 - GFF1708 0.20 +0.0 563,455 - GFF1708 0.20 -0.8 563,722 - GFF1708 0.62 -0.5 563,722 - GFF1708 0.62 -0.9 563,865 + GFF1708 0.84 -0.2 563,865 + GFF1708 0.84 +0.7 563,865 + GFF1708 0.84 -0.4 563,866 - GFF1708 0.84 +0.6 563,940 + -1.9 563,940 + -1.3 563,940 + -0.2 563,940 + -0.6 563,940 + +0.9 563,941 - -1.9 563,941 - +0.3 563,941 - +0.5 563,941 - -0.5 563,941 - -0.3 563,941 - -0.3 563,941 - -0.3 563,941 - +0.5 564,050 + -1.0 564,050 + -0.4 564,050 + -0.3 564,050 + +1.4 564,050 + +0.5 564,050 + +0.6 564,050 + -2.3 564,051 - -0.0 564,116 + GFF1709 0.15 +0.0 564,116 + GFF1709 0.15 -0.1 564,116 + GFF1709 0.15 +0.3 564,116 + GFF1709 0.15 +0.1 564,117 - GFF1709 0.15 -1.3 564,117 - GFF1709 0.15 -0.7 564,161 + GFF1709 0.20 -0.2 564,251 + GFF1709 0.30 -0.2 564,251 + GFF1709 0.30 -0.6 564,252 - GFF1709 0.30 +0.2 564,252 - GFF1709 0.30 -1.2 564,252 - GFF1709 0.30 +0.3 564,252 - GFF1709 0.30 +1.5 564,290 + GFF1709 0.34 -2.8 564,405 - GFF1709 0.47 +0.0 564,405 - GFF1709 0.47 +0.3 564,405 - GFF1709 0.47 -0.5 564,438 - GFF1709 0.51 -0.3 564,626 + GFF1709 0.71 +0.6 564,626 + GFF1709 0.71 -0.3 564,626 + GFF1709 0.71 -0.5 564,737 + GFF1709 0.84 +1.0 564,737 + GFF1709 0.84 +0.3 564,737 + GFF1709 0.84 -0.4 564,737 + GFF1709 0.84 +0.1 564,737 + GFF1709 0.84 +0.4 564,737 + GFF1709 0.84 +0.4 564,738 - GFF1709 0.84 -1.0 564,738 - GFF1709 0.84 +0.7 564,738 - GFF1709 0.84 -0.5 564,738 - GFF1709 0.84 -0.6 564,738 - GFF1709 0.84 -0.3 564,738 - GFF1709 0.84 -0.3 564,738 - GFF1709 0.84 +0.0 564,738 - GFF1709 0.84 -0.6 564,738 - GFF1709 0.84 -0.0 564,738 - GFF1709 0.84 -0.2 564,909 - +0.8 564,909 - +0.5
Or see this region's nucleotide sequence