Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1565 and GFF1566 are separated by 24 nucleotides GFF1566 and GFF1567 are separated by 7 nucleotides GFF1567 and GFF1568 overlap by 11 nucleotides GFF1568 and GFF1569 overlap by 35 nucleotides
GFF1565 - Tricarboxylate transport protein TctC, at 419,288 to 420,265
GFF1565
GFF1566 - Enoyl-CoA hydratase (EC 4.2.1.17), at 420,290 to 421,084
GFF1566
GFF1567 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 421,092 to 423,191
GFF1567
GFF1568 - 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-), at 423,181 to 424,017
GFF1568
GFF1569 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 423,983 to 424,960
GFF1569
Position (kb) 421
422
423
424 Strain fitness (log2 ratio) -2
-1
0
1 at 420.710 kb on + strand, within GFF1566 at 420.710 kb on + strand, within GFF1566 at 420.711 kb on - strand, within GFF1566 at 420.711 kb on - strand, within GFF1566 at 420.711 kb on - strand, within GFF1566 at 420.749 kb on + strand, within GFF1566 at 420.749 kb on + strand, within GFF1566 at 420.749 kb on + strand, within GFF1566 at 420.750 kb on - strand, within GFF1566 at 420.750 kb on - strand, within GFF1566 at 421.019 kb on + strand at 421.019 kb on + strand at 421.020 kb on - strand at 421.227 kb on + strand at 421.227 kb on + strand at 421.744 kb on - strand, within GFF1567 at 421.902 kb on + strand, within GFF1567 at 421.903 kb on - strand, within GFF1567 at 421.903 kb on - strand, within GFF1567 at 422.061 kb on + strand, within GFF1567 at 422.061 kb on + strand, within GFF1567 at 422.062 kb on - strand, within GFF1567 at 422.238 kb on + strand, within GFF1567 at 422.239 kb on - strand, within GFF1567 at 422.346 kb on + strand, within GFF1567 at 422.346 kb on + strand, within GFF1567 at 424.044 kb on + strand at 424.045 kb on - strand at 424.078 kb on - strand at 424.086 kb on + strand, within GFF1569 at 424.086 kb on + strand, within GFF1569 at 424.086 kb on + strand, within GFF1569 at 424.086 kb on + strand, within GFF1569 at 424.087 kb on - strand, within GFF1569 at 424.105 kb on - strand, within GFF1569 at 424.182 kb on + strand, within GFF1569
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 420,710 + GFF1566 0.53 -0.1 420,710 + GFF1566 0.53 -0.3 420,711 - GFF1566 0.53 +1.1 420,711 - GFF1566 0.53 -0.4 420,711 - GFF1566 0.53 +0.5 420,749 + GFF1566 0.58 +1.2 420,749 + GFF1566 0.58 +1.0 420,749 + GFF1566 0.58 -0.1 420,750 - GFF1566 0.58 +0.2 420,750 - GFF1566 0.58 -1.1 421,019 + +0.1 421,019 + -0.2 421,020 - -0.5 421,227 + -0.6 421,227 + -0.4 421,744 - GFF1567 0.31 +0.1 421,902 + GFF1567 0.39 +0.4 421,903 - GFF1567 0.39 -1.0 421,903 - GFF1567 0.39 -0.6 422,061 + GFF1567 0.46 -0.3 422,061 + GFF1567 0.46 -0.1 422,062 - GFF1567 0.46 +0.1 422,238 + GFF1567 0.55 -0.3 422,239 - GFF1567 0.55 +0.0 422,346 + GFF1567 0.60 -0.5 422,346 + GFF1567 0.60 -1.2 424,044 + -1.8 424,045 - +0.1 424,078 - -0.5 424,086 + GFF1569 0.11 -0.3 424,086 + GFF1569 0.11 +0.4 424,086 + GFF1569 0.11 +0.0 424,086 + GFF1569 0.11 -1.6 424,087 - GFF1569 0.11 +0.9 424,105 - GFF1569 0.12 +0.6 424,182 + GFF1569 0.20 +0.3
Or see this region's nucleotide sequence