Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1523

Experiment: Ying_all64 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1522 and GFF1523 overlap by 4 nucleotidesGFF1523 and GFF1524 overlap by 4 nucleotides GFF1522 - Muconate cycloisomerase (EC 5.5.1.1), at 377,087 to 378,211 GFF1522 GFF1523 - decarboxylase, at 378,208 to 378,945 GFF1523 GFF1524 - putative exported protein, at 378,942 to 379,922 GFF1524 Position (kb) 378 379Strain fitness (log2 ratio) -1 0 1at 377.424 kb on + strand, within GFF1522at 377.574 kb on + strand, within GFF1522at 377.604 kb on + strand, within GFF1522at 377.605 kb on - strand, within GFF1522at 377.814 kb on + strand, within GFF1522at 377.815 kb on - strand, within GFF1522at 377.961 kb on + strand, within GFF1522at 378.707 kb on + strand, within GFF1523at 379.447 kb on + strand, within GFF1524at 379.447 kb on + strand, within GFF1524at 379.448 kb on - strand, within GFF1524at 379.802 kb on - strand, within GFF1524

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
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377,424 + GFF1522 0.30 +1.3
377,574 + GFF1522 0.43 +0.7
377,604 + GFF1522 0.46 +0.2
377,605 - GFF1522 0.46 -0.3
377,814 + GFF1522 0.65 -0.3
377,815 - GFF1522 0.65 -0.1
377,961 + GFF1522 0.78 -0.4
378,707 + GFF1523 0.68 -0.4
379,447 + GFF1524 0.51 -1.3
379,447 + GFF1524 0.51 -0.1
379,448 - GFF1524 0.52 +1.3
379,802 - GFF1524 0.88 -0.6

Or see this region's nucleotide sequence