Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1504

Experiment: Ying_all64 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1503 and GFF1504 are separated by 280 nucleotidesGFF1504 and GFF1505 are separated by 8 nucleotidesGFF1505 and GFF1506 are separated by 81 nucleotides GFF1503 - hypothetical protein, at 353,615 to 354,568 GFF1503 GFF1504 - Cardiolipin synthetase (EC 2.7.8.-), at 354,849 to 356,234 GFF1504 GFF1505 - putative exported protein, at 356,243 to 356,683 GFF1505 GFF1506 - hypothetical protein, at 356,765 to 357,196 GFF1506 Position (kb) 354 355 356 357Strain fitness (log2 ratio) -2 -1 0 1 2at 353.886 kb on + strand, within GFF1503at 353.899 kb on - strand, within GFF1503at 353.937 kb on + strand, within GFF1503at 353.938 kb on - strand, within GFF1503at 353.938 kb on - strand, within GFF1503at 353.938 kb on - strand, within GFF1503at 353.938 kb on - strand, within GFF1503at 353.938 kb on - strand, within GFF1503at 353.938 kb on - strand, within GFF1503at 353.958 kb on + strand, within GFF1503at 353.958 kb on + strand, within GFF1503at 353.959 kb on - strand, within GFF1503at 354.063 kb on + strand, within GFF1503at 354.063 kb on + strand, within GFF1503at 354.063 kb on + strand, within GFF1503at 354.064 kb on - strand, within GFF1503at 354.064 kb on - strand, within GFF1503at 354.064 kb on - strand, within GFF1503at 354.064 kb on - strand, within GFF1503at 354.064 kb on - strand, within GFF1503at 354.064 kb on - strand, within GFF1503at 354.196 kb on - strand, within GFF1503at 354.205 kb on - strand, within GFF1503at 354.216 kb on + strand, within GFF1503at 354.216 kb on + strand, within GFF1503at 354.265 kb on + strand, within GFF1503at 354.265 kb on + strand, within GFF1503at 354.265 kb on + strand, within GFF1503at 354.265 kb on + strand, within GFF1503at 354.441 kb on + strand, within GFF1503at 354.442 kb on - strand, within GFF1503at 354.733 kb on + strandat 354.734 kb on - strandat 354.734 kb on - strandat 354.772 kb on + strandat 354.772 kb on + strandat 354.772 kb on + strandat 354.772 kb on + strandat 355.125 kb on + strand, within GFF1504at 355.125 kb on + strand, within GFF1504at 355.125 kb on + strand, within GFF1504at 355.125 kb on + strand, within GFF1504at 355.125 kb on + strand, within GFF1504at 355.126 kb on - strand, within GFF1504at 355.126 kb on - strand, within GFF1504at 355.126 kb on - strand, within GFF1504at 355.182 kb on + strand, within GFF1504at 355.182 kb on + strand, within GFF1504at 355.182 kb on + strand, within GFF1504at 355.182 kb on + strand, within GFF1504at 355.182 kb on + strand, within GFF1504at 355.182 kb on + strand, within GFF1504at 355.183 kb on - strand, within GFF1504at 355.183 kb on - strand, within GFF1504at 355.183 kb on - strand, within GFF1504at 355.183 kb on - strand, within GFF1504at 355.471 kb on - strand, within GFF1504at 355.662 kb on + strand, within GFF1504at 355.663 kb on - strand, within GFF1504at 355.728 kb on + strand, within GFF1504at 355.728 kb on + strand, within GFF1504at 355.728 kb on + strand, within GFF1504at 355.729 kb on - strand, within GFF1504at 355.729 kb on - strand, within GFF1504at 355.729 kb on - strand, within GFF1504at 355.729 kb on - strand, within GFF1504at 355.741 kb on - strand, within GFF1504at 355.741 kb on - strand, within GFF1504at 355.786 kb on - strand, within GFF1504at 355.801 kb on - strand, within GFF1504at 355.801 kb on - strand, within GFF1504at 355.924 kb on - strand, within GFF1504at 355.924 kb on - strand, within GFF1504at 355.924 kb on - strand, within GFF1504at 355.926 kb on + strand, within GFF1504at 355.927 kb on - strand, within GFF1504at 355.927 kb on - strand, within GFF1504at 355.959 kb on + strand, within GFF1504at 355.959 kb on + strand, within GFF1504at 355.960 kb on - strand, within GFF1504at 356.223 kb on + strandat 356.224 kb on - strandat 356.224 kb on - strandat 356.224 kb on - strandat 356.224 kb on - strandat 356.224 kb on - strandat 356.568 kb on + strand, within GFF1505at 356.669 kb on + strandat 356.669 kb on + strandat 356.670 kb on - strandat 356.670 kb on - strandat 356.710 kb on + strandat 356.710 kb on + strandat 356.710 kb on + strandat 356.710 kb on + strandat 356.711 kb on - strandat 356.711 kb on - strandat 356.711 kb on - strandat 356.711 kb on - strandat 356.711 kb on - strandat 356.735 kb on + strandat 356.736 kb on - strandat 356.832 kb on + strand, within GFF1506at 356.832 kb on + strand, within GFF1506at 356.832 kb on + strand, within GFF1506at 356.833 kb on - strand, within GFF1506at 356.833 kb on - strand, within GFF1506at 356.964 kb on + strand, within GFF1506at 356.965 kb on - strand, within GFF1506at 357.232 kb on + strandat 357.232 kb on + strandat 357.232 kb on + strandat 357.232 kb on + strandat 357.232 kb on + strandat 357.233 kb on - strandat 357.233 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
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353,886 + GFF1503 0.28 -0.3
353,899 - GFF1503 0.30 -1.0
353,937 + GFF1503 0.34 -1.6
353,938 - GFF1503 0.34 +1.3
353,938 - GFF1503 0.34 -0.8
353,938 - GFF1503 0.34 +0.1
353,938 - GFF1503 0.34 +0.2
353,938 - GFF1503 0.34 -0.2
353,938 - GFF1503 0.34 -1.0
353,958 + GFF1503 0.36 +0.5
353,958 + GFF1503 0.36 +0.7
353,959 - GFF1503 0.36 -0.0
354,063 + GFF1503 0.47 +0.5
354,063 + GFF1503 0.47 +0.1
354,063 + GFF1503 0.47 -0.6
354,064 - GFF1503 0.47 +0.3
354,064 - GFF1503 0.47 +0.0
354,064 - GFF1503 0.47 +0.0
354,064 - GFF1503 0.47 -0.0
354,064 - GFF1503 0.47 -2.6
354,064 - GFF1503 0.47 +0.3
354,196 - GFF1503 0.61 +0.3
354,205 - GFF1503 0.62 -0.0
354,216 + GFF1503 0.63 +0.1
354,216 + GFF1503 0.63 -0.0
354,265 + GFF1503 0.68 -0.2
354,265 + GFF1503 0.68 +0.9
354,265 + GFF1503 0.68 +0.5
354,265 + GFF1503 0.68 -0.4
354,441 + GFF1503 0.87 -1.1
354,442 - GFF1503 0.87 -0.4
354,733 + +0.0
354,734 - -0.4
354,734 - -0.4
354,772 + -1.2
354,772 + +0.2
354,772 + -0.3
354,772 + +0.2
355,125 + GFF1504 0.20 -1.2
355,125 + GFF1504 0.20 +0.7
355,125 + GFF1504 0.20 -0.9
355,125 + GFF1504 0.20 +0.8
355,125 + GFF1504 0.20 +1.2
355,126 - GFF1504 0.20 -0.2
355,126 - GFF1504 0.20 +1.5
355,126 - GFF1504 0.20 -1.1
355,182 + GFF1504 0.24 +0.2
355,182 + GFF1504 0.24 +0.5
355,182 + GFF1504 0.24 +0.6
355,182 + GFF1504 0.24 -0.2
355,182 + GFF1504 0.24 -0.2
355,182 + GFF1504 0.24 +0.3
355,183 - GFF1504 0.24 -0.0
355,183 - GFF1504 0.24 -0.3
355,183 - GFF1504 0.24 +0.4
355,183 - GFF1504 0.24 -0.3
355,471 - GFF1504 0.45 -0.5
355,662 + GFF1504 0.59 -0.1
355,663 - GFF1504 0.59 +0.6
355,728 + GFF1504 0.63 +0.5
355,728 + GFF1504 0.63 +0.1
355,728 + GFF1504 0.63 +1.8
355,729 - GFF1504 0.63 -0.3
355,729 - GFF1504 0.63 -0.5
355,729 - GFF1504 0.63 -0.4
355,729 - GFF1504 0.63 +0.0
355,741 - GFF1504 0.64 +0.8
355,741 - GFF1504 0.64 +0.4
355,786 - GFF1504 0.68 -0.0
355,801 - GFF1504 0.69 -0.0
355,801 - GFF1504 0.69 +0.0
355,924 - GFF1504 0.78 +0.0
355,924 - GFF1504 0.78 +0.3
355,924 - GFF1504 0.78 +0.8
355,926 + GFF1504 0.78 -0.3
355,927 - GFF1504 0.78 +0.6
355,927 - GFF1504 0.78 +0.1
355,959 + GFF1504 0.80 -0.9
355,959 + GFF1504 0.80 -1.1
355,960 - GFF1504 0.80 +0.3
356,223 + +0.3
356,224 - -1.2
356,224 - -0.2
356,224 - +0.3
356,224 - -0.1
356,224 - -0.2
356,568 + GFF1505 0.74 -0.6
356,669 + -0.1
356,669 + -1.4
356,670 - -0.4
356,670 - -0.2
356,710 + -0.3
356,710 + +0.2
356,710 + -1.4
356,710 + -0.1
356,711 - +0.1
356,711 - +0.1
356,711 - -0.7
356,711 - -0.1
356,711 - -0.5
356,735 + -0.1
356,736 - +0.6
356,832 + GFF1506 0.16 -0.5
356,832 + GFF1506 0.16 -1.0
356,832 + GFF1506 0.16 +0.1
356,833 - GFF1506 0.16 +0.4
356,833 - GFF1506 0.16 +0.2
356,964 + GFF1506 0.46 -1.0
356,965 - GFF1506 0.46 -0.8
357,232 + -0.5
357,232 + -0.6
357,232 + -0.5
357,232 + -0.2
357,232 + +1.1
357,233 - -0.6
357,233 - -0.2

Or see this region's nucleotide sequence