Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1380 and GFF1381 are separated by 9 nucleotides GFF1381 and GFF1382 are separated by 84 nucleotides GFF1382 and GFF1383 are separated by 13 nucleotides GFF1383 and GFF1384 overlap by 4 nucleotides GFF1384 and GFF1385 are separated by 4 nucleotides
GFF1380 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 236,311 to 237,408
GFF1380
GFF1381 - General secretion pathway protein C, at 237,418 to 237,924
GFF1381
GFF1382 - General secretion pathway protein G, at 238,009 to 238,479
GFF1382
GFF1383 - General secretion pathway protein H, at 238,493 to 238,951
GFF1383
GFF1384 - General secretion pathway protein I, at 238,948 to 239,316
GFF1384
GFF1385 - General secretion pathway protein J, at 239,321 to 240,052
GFF1385
Position (kb) 238
239 Strain fitness (log2 ratio) -2
-1
0
1 at 237.187 kb on + strand, within GFF1380 at 237.188 kb on - strand, within GFF1380 at 237.244 kb on + strand, within GFF1380 at 237.244 kb on + strand, within GFF1380 at 237.245 kb on - strand, within GFF1380 at 237.245 kb on - strand, within GFF1380 at 237.245 kb on - strand, within GFF1380 at 237.245 kb on - strand, within GFF1380 at 237.552 kb on - strand, within GFF1381 at 237.632 kb on + strand, within GFF1381 at 237.632 kb on + strand, within GFF1381 at 237.633 kb on - strand, within GFF1381 at 237.925 kb on - strand at 237.935 kb on + strand at 237.935 kb on + strand at 237.935 kb on + strand at 237.935 kb on + strand at 237.935 kb on + strand at 237.936 kb on - strand at 237.936 kb on - strand at 238.231 kb on + strand, within GFF1382 at 238.232 kb on - strand, within GFF1382 at 238.330 kb on + strand, within GFF1382 at 238.370 kb on - strand, within GFF1382 at 238.375 kb on + strand, within GFF1382 at 238.375 kb on + strand, within GFF1382 at 238.375 kb on + strand, within GFF1382 at 238.375 kb on + strand, within GFF1382 at 238.375 kb on + strand, within GFF1382 at 238.376 kb on - strand, within GFF1382
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 237,187 + GFF1380 0.80 -0.5 237,188 - GFF1380 0.80 +0.3 237,244 + GFF1380 0.85 +1.4 237,244 + GFF1380 0.85 -0.5 237,245 - GFF1380 0.85 +0.3 237,245 - GFF1380 0.85 -0.5 237,245 - GFF1380 0.85 -0.8 237,245 - GFF1380 0.85 -0.0 237,552 - GFF1381 0.26 -1.6 237,632 + GFF1381 0.42 +0.6 237,632 + GFF1381 0.42 -1.2 237,633 - GFF1381 0.42 +0.1 237,925 - -0.2 237,935 + +0.2 237,935 + +1.4 237,935 + +0.0 237,935 + +0.9 237,935 + -0.3 237,936 - +0.9 237,936 - +0.0 238,231 + GFF1382 0.47 +1.4 238,232 - GFF1382 0.47 +0.4 238,330 + GFF1382 0.68 -0.1 238,370 - GFF1382 0.77 +0.5 238,375 + GFF1382 0.78 +1.0 238,375 + GFF1382 0.78 -0.0 238,375 + GFF1382 0.78 -0.3 238,375 + GFF1382 0.78 -2.4 238,375 + GFF1382 0.78 -0.6 238,376 - GFF1382 0.78 +0.1
Or see this region's nucleotide sequence