Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1225

Experiment: Ying_all64 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 1
87,071	+				-0.4
87,071	+				+1.1
87,072	-				+0.1
87,072	-				-0.7
87,072	-				-1.1
87,072	-				-0.7
87,072	-				-0.9
87,072	-				+0.1
87,072	-				+0.3
87,072	-				+0.1
87,072	-				+1.0
87,125	+		GFF1223	0.12	-0.1
87,125	+		GFF1223	0.12	-0.3
87,125	+		GFF1223	0.12	-0.2
87,125	+		GFF1223	0.12	-0.3
87,126	-		GFF1223	0.12	+0.8
87,126	-		GFF1223	0.12	+0.5
87,126	-		GFF1223	0.12	-1.8
87,126	-		GFF1223	0.12	+0.5
87,126	-		GFF1223	0.12	-3.2
87,126	-		GFF1223	0.12	-1.0
87,126	-		GFF1223	0.12	+0.7
87,126	-		GFF1223	0.12	-1.1
87,126	-		GFF1223	0.12	-0.6
87,126	-		GFF1223	0.12	-1.0
87,126	-		GFF1223	0.12	+0.2
87,126	-		GFF1223	0.12	-1.1
87,209	+		GFF1223	0.30	-0.5
87,209	+		GFF1223	0.30	-0.4
87,210	-		GFF1223	0.31	-1.2
87,215	+		GFF1223	0.32	-1.4
87,215	+		GFF1223	0.32	-0.6
87,215	+		GFF1223	0.32	-0.2
87,368	+		GFF1223	0.65	+0.4
87,368	+		GFF1223	0.65	-0.8
87,368	+		GFF1223	0.65	-0.8
87,368	+		GFF1223	0.65	-0.0
87,368	+		GFF1223	0.65	-1.1
87,369	-		GFF1223	0.65	-0.6
87,369	-		GFF1223	0.65	-1.3
87,369	-		GFF1223	0.65	-0.2
87,485	+				-0.7
87,485	+				-2.0
87,486	-				-0.7
87,486	-				-0.2
87,486	-				+1.8
87,486	-				-1.6
87,579	+				-1.5
87,609	+				-1.1
87,610	-				+0.8
87,610	-				-0.5
87,610	-				-0.3
87,610	-				+0.2
87,610	-				-0.2
87,796	+		GFF1224	0.61	-2.1
87,796	+		GFF1224	0.61	+0.6
87,796	+		GFF1224	0.61	-0.2
87,796	+		GFF1224	0.61	+0.6
87,796	+		GFF1224	0.61	+0.2
87,796	+		GFF1224	0.61	-1.0
87,796	+		GFF1224	0.61	-0.0
87,796	+		GFF1224	0.61	-0.4
87,796	+		GFF1224	0.61	-0.3
87,797	-		GFF1224	0.61	-0.1
87,797	-		GFF1224	0.61	-0.1
87,797	-		GFF1224	0.61	+0.7
87,797	-		GFF1224	0.61	+0.3
87,797	-		GFF1224	0.61	+1.2
87,797	-		GFF1224	0.61	-0.5
87,797	-		GFF1224	0.61	-1.4
87,797	-		GFF1224	0.61	+0.2
87,797	-		GFF1224	0.61	+0.7
87,797	-		GFF1224	0.61	+0.0
87,856	+		GFF1224	0.84	+0.7
87,856	+		GFF1224	0.84	+0.1
87,856	+		GFF1224	0.84	+0.2
87,856	+		GFF1224	0.84	+0.6
87,857	-		GFF1224	0.84	+0.1
87,857	-		GFF1224	0.84	+0.8
87,866	-		GFF1224	0.88	+1.2
88,011	+		GFF1225	0.18	-1.2
88,352	+				+0.2
88,352	+				-0.4
88,353	-				+0.4
88,353	-				-0.6
88,353	-				-1.0
88,353	-				+0.2
88,353	-				-2.9
88,353	-				+0.8
88,353	-				+0.0
88,365	+				-1.0
88,366	-				+0.4
88,366	-				-0.4
89,274	+				+0.9
89,274	+				+0.9
89,274	+				+1.8
89,275	-				+0.2
89,275	-				-0.5
89,275	-				-0.6
89,275	-				+0.1
89,275	-				+0.5
89,275	-				+0.4
89,275	-				+0.6
89,275	-				+0.0
89,324	+				+0.0
89,324	+				+0.6
89,324	+				+1.0
89,324	+				+0.6
89,324	+				-1.1
89,324	+				-0.8
89,324	+				+0.7
89,324	+				+0.3
89,324	+				-0.1
89,324	+				+0.5
89,324	+				-0.0
89,324	+				+0.4
89,324	+				+0.8
89,325	-				-0.2
89,325	-				+0.0
89,325	-				-0.3
89,325	-				-0.1
89,325	-				+0.2
89,325	-				-1.1
89,325	-				-0.4
89,325	-				-0.2
89,325	-				-0.6
89,325	-				-0.6
89,325	-				+0.4
89,325	-				-0.0
89,325	-				+0.6
89,325	-				-0.6
89,325	-				+0.1
89,325	-				+0.6
89,325	-				+0.8
89,326	+				+2.2
89,326	+				+0.2
89,326	+				+0.1
89,327	-				+0.5
89,327	-				-0.3
89,327	-				-1.8