Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1196

Experiment: Ying_all64 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1195 and GFF1196 are separated by 16 nucleotidesGFF1196 and GFF1197 are separated by 99 nucleotidesGFF1197 and GFF1198 are separated by 1 nucleotides GFF1195 - Sigma-54 dependent response regulator, at 53,530 to 54,912 GFF1195 GFF1196 - Signal transduction histidine kinase, at 54,929 to 57,040 GFF1196 GFF1197 - Putative formate dehydrogenase-specific chaperone, at 57,140 to 57,760 GFF1197 GFF1198 - Iron-sulfur cluster-binding protein, at 57,762 to 59,831 GFF1198 Position (kb) 54 55 56 57 58Strain fitness (log2 ratio) -2 -1 0 1at 53.932 kb on + strand, within GFF1195at 53.933 kb on - strand, within GFF1195at 53.933 kb on - strand, within GFF1195at 54.280 kb on + strand, within GFF1195at 54.281 kb on - strand, within GFF1195at 54.281 kb on - strand, within GFF1195at 54.484 kb on + strand, within GFF1195at 54.484 kb on + strand, within GFF1195at 54.485 kb on - strand, within GFF1195at 54.485 kb on - strand, within GFF1195at 54.485 kb on - strand, within GFF1195at 54.485 kb on - strand, within GFF1195at 54.485 kb on - strand, within GFF1195at 54.485 kb on - strand, within GFF1195at 54.485 kb on - strand, within GFF1195at 54.643 kb on + strand, within GFF1195at 54.728 kb on - strand, within GFF1195at 55.061 kb on + strandat 55.062 kb on - strandat 55.062 kb on - strandat 55.062 kb on - strandat 55.062 kb on - strandat 55.116 kb on - strandat 55.116 kb on - strandat 55.120 kb on - strandat 55.181 kb on + strand, within GFF1196at 55.181 kb on + strand, within GFF1196at 55.182 kb on - strand, within GFF1196at 55.182 kb on - strand, within GFF1196at 55.182 kb on - strand, within GFF1196at 55.283 kb on + strand, within GFF1196at 55.284 kb on - strand, within GFF1196at 55.284 kb on - strand, within GFF1196at 55.668 kb on - strand, within GFF1196at 55.863 kb on - strand, within GFF1196at 55.863 kb on - strand, within GFF1196at 55.863 kb on - strand, within GFF1196at 55.863 kb on - strand, within GFF1196at 55.919 kb on + strand, within GFF1196at 55.919 kb on + strand, within GFF1196at 55.919 kb on + strand, within GFF1196at 55.919 kb on + strand, within GFF1196at 55.919 kb on + strand, within GFF1196at 55.919 kb on + strand, within GFF1196at 55.919 kb on + strand, within GFF1196at 55.919 kb on + strand, within GFF1196at 55.919 kb on + strand, within GFF1196at 55.919 kb on + strand, within GFF1196at 55.920 kb on - strand, within GFF1196at 55.920 kb on - strand, within GFF1196at 55.920 kb on - strand, within GFF1196at 55.920 kb on - strand, within GFF1196at 55.920 kb on - strand, within GFF1196at 55.920 kb on - strand, within GFF1196at 55.920 kb on - strand, within GFF1196at 55.920 kb on - strand, within GFF1196at 55.920 kb on - strand, within GFF1196at 55.920 kb on - strand, within GFF1196at 55.920 kb on - strand, within GFF1196at 55.920 kb on - strand, within GFF1196at 55.920 kb on - strand, within GFF1196at 56.505 kb on - strand, within GFF1196at 56.531 kb on + strand, within GFF1196at 56.531 kb on + strand, within GFF1196at 57.086 kb on + strandat 57.087 kb on - strandat 57.087 kb on - strandat 57.087 kb on - strandat 57.087 kb on - strandat 57.151 kb on + strandat 57.151 kb on + strandat 57.152 kb on - strandat 57.211 kb on - strand, within GFF1197at 57.339 kb on + strand, within GFF1197at 57.340 kb on - strand, within GFF1197at 57.340 kb on - strand, within GFF1197at 57.361 kb on - strand, within GFF1197at 57.361 kb on - strand, within GFF1197at 57.361 kb on - strand, within GFF1197at 57.471 kb on + strand, within GFF1197at 57.471 kb on + strand, within GFF1197at 57.471 kb on + strand, within GFF1197at 57.472 kb on - strand, within GFF1197at 57.528 kb on + strand, within GFF1197at 57.673 kb on - strand, within GFF1197at 57.673 kb on - strand, within GFF1197at 57.673 kb on - strand, within GFF1197at 57.675 kb on + strand, within GFF1197at 57.675 kb on + strand, within GFF1197at 57.676 kb on - strand, within GFF1197at 57.696 kb on + strand, within GFF1197at 57.696 kb on + strand, within GFF1197at 57.696 kb on + strand, within GFF1197at 57.697 kb on - strand, within GFF1197at 57.697 kb on - strand, within GFF1197at 57.697 kb on - strand, within GFF1197at 57.697 kb on - strand, within GFF1197at 57.799 kb on + strandat 57.800 kb on - strandat 57.800 kb on - strandat 57.943 kb on + strandat 57.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1
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53,932 + GFF1195 0.29 -1.2
53,933 - GFF1195 0.29 -0.0
53,933 - GFF1195 0.29 -0.5
54,280 + GFF1195 0.54 +0.2
54,281 - GFF1195 0.54 +0.9
54,281 - GFF1195 0.54 +0.7
54,484 + GFF1195 0.69 +0.3
54,484 + GFF1195 0.69 -1.1
54,485 - GFF1195 0.69 +0.0
54,485 - GFF1195 0.69 -0.6
54,485 - GFF1195 0.69 -0.3
54,485 - GFF1195 0.69 +0.1
54,485 - GFF1195 0.69 -1.1
54,485 - GFF1195 0.69 -0.7
54,485 - GFF1195 0.69 -0.1
54,643 + GFF1195 0.80 +0.4
54,728 - GFF1195 0.87 +1.0
55,061 + +0.0
55,062 - +0.3
55,062 - -0.9
55,062 - +0.6
55,062 - +0.3
55,116 - +0.8
55,116 - +0.3
55,120 - +0.1
55,181 + GFF1196 0.12 -0.3
55,181 + GFF1196 0.12 -0.8
55,182 - GFF1196 0.12 +0.1
55,182 - GFF1196 0.12 -0.8
55,182 - GFF1196 0.12 -1.4
55,283 + GFF1196 0.17 -0.8
55,284 - GFF1196 0.17 +0.0
55,284 - GFF1196 0.17 -0.3
55,668 - GFF1196 0.35 +0.1
55,863 - GFF1196 0.44 -0.8
55,863 - GFF1196 0.44 -0.7
55,863 - GFF1196 0.44 -0.5
55,863 - GFF1196 0.44 -0.0
55,919 + GFF1196 0.47 -0.1
55,919 + GFF1196 0.47 -0.8
55,919 + GFF1196 0.47 -1.8
55,919 + GFF1196 0.47 -0.6
55,919 + GFF1196 0.47 +0.5
55,919 + GFF1196 0.47 -0.6
55,919 + GFF1196 0.47 +0.5
55,919 + GFF1196 0.47 -0.4
55,919 + GFF1196 0.47 -0.2
55,919 + GFF1196 0.47 -0.0
55,920 - GFF1196 0.47 -0.4
55,920 - GFF1196 0.47 +0.0
55,920 - GFF1196 0.47 -0.1
55,920 - GFF1196 0.47 -0.2
55,920 - GFF1196 0.47 +0.0
55,920 - GFF1196 0.47 -0.5
55,920 - GFF1196 0.47 -0.0
55,920 - GFF1196 0.47 -0.7
55,920 - GFF1196 0.47 +0.6
55,920 - GFF1196 0.47 -0.4
55,920 - GFF1196 0.47 -0.7
55,920 - GFF1196 0.47 -1.0
55,920 - GFF1196 0.47 -0.5
56,505 - GFF1196 0.75 +0.2
56,531 + GFF1196 0.76 +0.5
56,531 + GFF1196 0.76 -1.9
57,086 + +0.3
57,087 - -0.2
57,087 - +0.9
57,087 - +0.4
57,087 - +0.0
57,151 + +0.1
57,151 + -2.4
57,152 - -0.1
57,211 - GFF1197 0.11 -0.3
57,339 + GFF1197 0.32 +0.9
57,340 - GFF1197 0.32 +0.6
57,340 - GFF1197 0.32 +0.1
57,361 - GFF1197 0.36 +0.3
57,361 - GFF1197 0.36 -0.4
57,361 - GFF1197 0.36 -0.3
57,471 + GFF1197 0.53 +0.3
57,471 + GFF1197 0.53 -0.1
57,471 + GFF1197 0.53 -0.1
57,472 - GFF1197 0.53 +0.4
57,528 + GFF1197 0.62 +0.7
57,673 - GFF1197 0.86 -1.8
57,673 - GFF1197 0.86 -0.6
57,673 - GFF1197 0.86 +0.4
57,675 + GFF1197 0.86 -0.7
57,675 + GFF1197 0.86 -1.1
57,676 - GFF1197 0.86 -0.4
57,696 + GFF1197 0.90 -0.1
57,696 + GFF1197 0.90 +0.4
57,696 + GFF1197 0.90 -0.6
57,697 - GFF1197 0.90 -0.0
57,697 - GFF1197 0.90 +0.8
57,697 - GFF1197 0.90 +0.5
57,697 - GFF1197 0.90 -1.1
57,799 + +0.2
57,800 - -0.2
57,800 - +0.0
57,943 + +0.6
57,943 - -0.6

Or see this region's nucleotide sequence