Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1066 and GFF1067 are separated by 63 nucleotides GFF1067 and GFF1068 are separated by 8 nucleotides
GFF1066 - Mobile element protein, at 809,706 to 811,232
GFF1066
GFF1067 - Mobile element protein, at 811,296 to 811,469
GFF1067
GFF1068 - hypothetical protein, at 811,478 to 817,912
GFF1068
Position (kb) 811
812
813
814
815
816
817
818 Strain fitness (log2 ratio) -2
-1
0
1
2 at 810.676 kb on + strand, within GFF1066 at 810.829 kb on + strand, within GFF1066 at 810.830 kb on - strand, within GFF1066 at 810.830 kb on - strand, within GFF1066 at 811.297 kb on + strand at 811.297 kb on + strand at 811.298 kb on - strand at 811.474 kb on - strand at 811.511 kb on - strand at 811.721 kb on + strand at 811.721 kb on + strand at 811.721 kb on + strand at 811.722 kb on - strand at 811.722 kb on - strand at 812.059 kb on - strand at 812.073 kb on + strand at 812.148 kb on + strand, within GFF1068 at 812.148 kb on + strand, within GFF1068 at 812.148 kb on + strand, within GFF1068 at 812.149 kb on - strand, within GFF1068 at 812.149 kb on - strand, within GFF1068 at 812.149 kb on - strand, within GFF1068 at 812.241 kb on + strand, within GFF1068 at 812.241 kb on + strand, within GFF1068 at 812.242 kb on - strand, within GFF1068 at 812.275 kb on - strand, within GFF1068 at 812.280 kb on + strand, within GFF1068 at 812.281 kb on - strand, within GFF1068 at 812.281 kb on - strand, within GFF1068 at 812.560 kb on - strand, within GFF1068 at 812.993 kb on + strand, within GFF1068 at 812.993 kb on + strand, within GFF1068 at 812.994 kb on - strand, within GFF1068 at 813.042 kb on + strand, within GFF1068 at 813.043 kb on - strand, within GFF1068 at 813.255 kb on + strand, within GFF1068 at 813.255 kb on + strand, within GFF1068 at 813.255 kb on + strand, within GFF1068 at 813.256 kb on - strand, within GFF1068 at 813.399 kb on + strand, within GFF1068 at 813.504 kb on + strand, within GFF1068 at 813.607 kb on + strand, within GFF1068 at 813.608 kb on - strand, within GFF1068 at 813.639 kb on + strand, within GFF1068 at 813.741 kb on + strand, within GFF1068 at 813.742 kb on - strand, within GFF1068 at 813.742 kb on - strand, within GFF1068 at 813.742 kb on - strand, within GFF1068 at 813.744 kb on - strand, within GFF1068 at 813.906 kb on + strand, within GFF1068 at 813.906 kb on + strand, within GFF1068 at 813.952 kb on - strand, within GFF1068 at 814.052 kb on + strand, within GFF1068 at 814.128 kb on + strand, within GFF1068 at 814.128 kb on + strand, within GFF1068 at 814.133 kb on + strand, within GFF1068 at 814.133 kb on + strand, within GFF1068 at 814.134 kb on - strand, within GFF1068 at 814.134 kb on - strand, within GFF1068 at 814.134 kb on - strand, within GFF1068 at 814.134 kb on - strand, within GFF1068 at 814.134 kb on - strand, within GFF1068 at 814.134 kb on - strand, within GFF1068 at 814.173 kb on + strand, within GFF1068 at 814.179 kb on + strand, within GFF1068 at 814.179 kb on + strand, within GFF1068 at 814.180 kb on - strand, within GFF1068 at 814.180 kb on - strand, within GFF1068 at 814.207 kb on - strand, within GFF1068 at 814.207 kb on - strand, within GFF1068 at 814.380 kb on + strand, within GFF1068 at 814.380 kb on + strand, within GFF1068 at 814.380 kb on + strand, within GFF1068 at 814.381 kb on - strand, within GFF1068 at 814.723 kb on - strand, within GFF1068 at 814.989 kb on + strand, within GFF1068 at 814.990 kb on - strand, within GFF1068 at 815.070 kb on + strand, within GFF1068 at 815.071 kb on - strand, within GFF1068 at 815.071 kb on - strand, within GFF1068 at 815.576 kb on + strand, within GFF1068 at 815.577 kb on - strand, within GFF1068 at 815.577 kb on - strand, within GFF1068 at 815.577 kb on - strand, within GFF1068 at 815.718 kb on + strand, within GFF1068 at 815.718 kb on + strand, within GFF1068 at 815.719 kb on - strand, within GFF1068 at 815.734 kb on - strand, within GFF1068 at 815.734 kb on - strand, within GFF1068 at 815.734 kb on - strand, within GFF1068 at 815.914 kb on - strand, within GFF1068 at 815.979 kb on + strand, within GFF1068 at 815.979 kb on + strand, within GFF1068 at 815.980 kb on - strand, within GFF1068 at 815.980 kb on - strand, within GFF1068 at 815.980 kb on - strand, within GFF1068 at 816.008 kb on + strand, within GFF1068 at 816.008 kb on + strand, within GFF1068 at 816.008 kb on + strand, within GFF1068 at 816.009 kb on - strand, within GFF1068 at 816.009 kb on - strand, within GFF1068 at 816.009 kb on - strand, within GFF1068 at 816.040 kb on + strand, within GFF1068 at 816.042 kb on + strand, within GFF1068 at 816.042 kb on + strand, within GFF1068 at 816.104 kb on - strand, within GFF1068 at 816.156 kb on + strand, within GFF1068 at 816.156 kb on + strand, within GFF1068 at 816.156 kb on + strand, within GFF1068 at 816.156 kb on + strand, within GFF1068 at 816.156 kb on + strand, within GFF1068 at 816.156 kb on + strand, within GFF1068 at 816.157 kb on - strand, within GFF1068 at 816.157 kb on - strand, within GFF1068 at 816.157 kb on - strand, within GFF1068 at 816.157 kb on - strand, within GFF1068 at 816.157 kb on - strand, within GFF1068 at 816.157 kb on - strand, within GFF1068 at 816.157 kb on - strand, within GFF1068 at 816.172 kb on + strand, within GFF1068 at 816.173 kb on - strand, within GFF1068 at 816.202 kb on - strand, within GFF1068 at 816.445 kb on + strand, within GFF1068 at 816.446 kb on - strand, within GFF1068 at 816.535 kb on + strand, within GFF1068 at 816.545 kb on + strand, within GFF1068 at 817.082 kb on + strand, within GFF1068 at 817.082 kb on + strand, within GFF1068 at 817.082 kb on + strand, within GFF1068 at 817.082 kb on + strand, within GFF1068 at 817.082 kb on + strand, within GFF1068 at 817.083 kb on - strand, within GFF1068 at 817.083 kb on - strand, within GFF1068 at 817.296 kb on + strand at 817.296 kb on + strand at 817.297 kb on - strand at 817.297 kb on - strand at 817.597 kb on + strand at 817.598 kb on - strand at 817.598 kb on - strand at 817.598 kb on - strand at 817.598 kb on - strand at 817.602 kb on - strand at 817.655 kb on + strand at 817.656 kb on - strand at 817.658 kb on + strand at 817.658 kb on + strand at 817.658 kb on + strand at 817.658 kb on + strand at 817.658 kb on + strand at 817.658 kb on + strand at 817.658 kb on + strand at 817.658 kb on + strand at 817.659 kb on - strand at 817.659 kb on - strand at 817.659 kb on - strand at 817.659 kb on - strand at 817.659 kb on - strand at 817.659 kb on - strand at 817.659 kb on - strand at 817.725 kb on + strand at 817.725 kb on + strand at 817.725 kb on + strand at 817.725 kb on + strand at 817.725 kb on + strand at 817.726 kb on - strand at 817.726 kb on - strand at 817.726 kb on - strand at 817.726 kb on - strand at 817.726 kb on - strand at 817.771 kb on + strand at 817.811 kb on + strand at 817.811 kb on + strand at 817.811 kb on + strand at 817.811 kb on + strand at 817.811 kb on + strand at 818.212 kb on + strand at 818.212 kb on + strand at 818.212 kb on + strand at 818.212 kb on + strand at 818.213 kb on - strand at 818.213 kb on - strand at 818.213 kb on - strand at 818.213 kb on - strand at 818.213 kb on - strand at 818.213 kb on - strand at 818.213 kb on - strand at 818.461 kb on + strand at 818.461 kb on + strand at 818.505 kb on + strand at 818.505 kb on + strand at 818.505 kb on + strand at 818.505 kb on + strand at 818.506 kb on - strand at 818.506 kb on - strand at 818.506 kb on - strand at 818.619 kb on + strand at 818.620 kb on - strand at 818.620 kb on - strand at 818.632 kb on + strand at 818.632 kb on + strand at 818.634 kb on - strand at 818.635 kb on + strand at 818.635 kb on + strand at 818.635 kb on + strand at 818.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 810,676 + GFF1066 0.64 -0.7 810,829 + GFF1066 0.74 -0.1 810,830 - GFF1066 0.74 +0.0 810,830 - GFF1066 0.74 -0.6 811,297 + -0.2 811,297 + -0.0 811,298 - -0.6 811,474 - -0.3 811,511 - +0.9 811,721 + -0.5 811,721 + +0.2 811,721 + -0.8 811,722 - -0.1 811,722 - +0.0 812,059 - +1.0 812,073 + -1.0 812,148 + GFF1068 0.10 -0.5 812,148 + GFF1068 0.10 +0.0 812,148 + GFF1068 0.10 -0.4 812,149 - GFF1068 0.10 -0.1 812,149 - GFF1068 0.10 +0.2 812,149 - GFF1068 0.10 +0.0 812,241 + GFF1068 0.12 +0.1 812,241 + GFF1068 0.12 -0.4 812,242 - GFF1068 0.12 -0.1 812,275 - GFF1068 0.12 +0.0 812,280 + GFF1068 0.12 +1.4 812,281 - GFF1068 0.12 +0.1 812,281 - GFF1068 0.12 -0.1 812,560 - GFF1068 0.17 +0.3 812,993 + GFF1068 0.24 +0.9 812,993 + GFF1068 0.24 -0.6 812,994 - GFF1068 0.24 +1.0 813,042 + GFF1068 0.24 +0.9 813,043 - GFF1068 0.24 -0.8 813,255 + GFF1068 0.28 +0.2 813,255 + GFF1068 0.28 -0.3 813,255 + GFF1068 0.28 -0.1 813,256 - GFF1068 0.28 +0.2 813,399 + GFF1068 0.30 +0.7 813,504 + GFF1068 0.31 -0.7 813,607 + GFF1068 0.33 +0.4 813,608 - GFF1068 0.33 -0.7 813,639 + GFF1068 0.34 -0.2 813,741 + GFF1068 0.35 -1.2 813,742 - GFF1068 0.35 +0.2 813,742 - GFF1068 0.35 -0.3 813,742 - GFF1068 0.35 +0.2 813,744 - GFF1068 0.35 +0.8 813,906 + GFF1068 0.38 +0.3 813,906 + GFF1068 0.38 -0.1 813,952 - GFF1068 0.38 +1.8 814,052 + GFF1068 0.40 -1.1 814,128 + GFF1068 0.41 -0.5 814,128 + GFF1068 0.41 +0.3 814,133 + GFF1068 0.41 -0.3 814,133 + GFF1068 0.41 -0.3 814,134 - GFF1068 0.41 -0.1 814,134 - GFF1068 0.41 -1.0 814,134 - GFF1068 0.41 +0.0 814,134 - GFF1068 0.41 +0.1 814,134 - GFF1068 0.41 +0.3 814,134 - GFF1068 0.41 -0.4 814,173 + GFF1068 0.42 -0.1 814,179 + GFF1068 0.42 -1.3 814,179 + GFF1068 0.42 -0.2 814,180 - GFF1068 0.42 +0.0 814,180 - GFF1068 0.42 -1.2 814,207 - GFF1068 0.42 -0.1 814,207 - GFF1068 0.42 -0.7 814,380 + GFF1068 0.45 -1.2 814,380 + GFF1068 0.45 -0.5 814,380 + GFF1068 0.45 -0.2 814,381 - GFF1068 0.45 -1.4 814,723 - GFF1068 0.50 +0.0 814,989 + GFF1068 0.55 -2.0 814,990 - GFF1068 0.55 -0.4 815,070 + GFF1068 0.56 -0.7 815,071 - GFF1068 0.56 +0.2 815,071 - GFF1068 0.56 -1.7 815,576 + GFF1068 0.64 -1.0 815,577 - GFF1068 0.64 -0.2 815,577 - GFF1068 0.64 +0.1 815,577 - GFF1068 0.64 +0.6 815,718 + GFF1068 0.66 -0.1 815,718 + GFF1068 0.66 -0.3 815,719 - GFF1068 0.66 -0.1 815,734 - GFF1068 0.66 -0.1 815,734 - GFF1068 0.66 +0.0 815,734 - GFF1068 0.66 -0.1 815,914 - GFF1068 0.69 -0.3 815,979 + GFF1068 0.70 -0.0 815,979 + GFF1068 0.70 +0.8 815,980 - GFF1068 0.70 -0.3 815,980 - GFF1068 0.70 -0.2 815,980 - GFF1068 0.70 +0.1 816,008 + GFF1068 0.70 +0.3 816,008 + GFF1068 0.70 -0.7 816,008 + GFF1068 0.70 +1.0 816,009 - GFF1068 0.70 -0.8 816,009 - GFF1068 0.70 -0.3 816,009 - GFF1068 0.70 +0.0 816,040 + GFF1068 0.71 -0.3 816,042 + GFF1068 0.71 +0.3 816,042 + GFF1068 0.71 -0.5 816,104 - GFF1068 0.72 -0.8 816,156 + GFF1068 0.73 -1.4 816,156 + GFF1068 0.73 +0.0 816,156 + GFF1068 0.73 +0.0 816,156 + GFF1068 0.73 +0.3 816,156 + GFF1068 0.73 +0.3 816,156 + GFF1068 0.73 -0.4 816,157 - GFF1068 0.73 +0.6 816,157 - GFF1068 0.73 -0.6 816,157 - GFF1068 0.73 +0.2 816,157 - GFF1068 0.73 -0.3 816,157 - GFF1068 0.73 +0.9 816,157 - GFF1068 0.73 +0.2 816,157 - GFF1068 0.73 -0.1 816,172 + GFF1068 0.73 -0.3 816,173 - GFF1068 0.73 -0.1 816,202 - GFF1068 0.73 -0.6 816,445 + GFF1068 0.77 +0.1 816,446 - GFF1068 0.77 +0.0 816,535 + GFF1068 0.79 +1.7 816,545 + GFF1068 0.79 -0.1 817,082 + GFF1068 0.87 -1.2 817,082 + GFF1068 0.87 -0.1 817,082 + GFF1068 0.87 -0.3 817,082 + GFF1068 0.87 -0.6 817,082 + GFF1068 0.87 +0.0 817,083 - GFF1068 0.87 +0.1 817,083 - GFF1068 0.87 +1.2 817,296 + +1.7 817,296 + -0.3 817,297 - +0.0 817,297 - +1.0 817,597 + +0.6 817,598 - -0.7 817,598 - +0.3 817,598 - +0.2 817,598 - -0.7 817,602 - +1.6 817,655 + -2.6 817,656 - -0.7 817,658 + -1.1 817,658 + -0.1 817,658 + +0.1 817,658 + +0.5 817,658 + +1.3 817,658 + -0.5 817,658 + -0.2 817,658 + -0.2 817,659 - -1.0 817,659 - -0.3 817,659 - -0.1 817,659 - -0.7 817,659 - +0.1 817,659 - -0.4 817,659 - -0.2 817,725 + +0.4 817,725 + -1.2 817,725 + +1.6 817,725 + +0.3 817,725 + -1.3 817,726 - -0.3 817,726 - +0.0 817,726 - -0.1 817,726 - +0.1 817,726 - -0.4 817,771 + -0.2 817,811 + -2.1 817,811 + +0.1 817,811 + -0.3 817,811 + -1.1 817,811 + +0.5 818,212 + -0.6 818,212 + +0.7 818,212 + +0.0 818,212 + +0.6 818,213 - -0.3 818,213 - +0.3 818,213 - +0.8 818,213 - -0.2 818,213 - -1.6 818,213 - -0.4 818,213 - -0.2 818,461 + +0.5 818,461 + +0.5 818,505 + -0.3 818,505 + +0.1 818,505 + +0.2 818,505 + -0.5 818,506 - +0.9 818,506 - -0.3 818,506 - -1.2 818,619 + -0.1 818,620 - -0.8 818,620 - -0.1 818,632 + +0.2 818,632 + +0.9 818,634 - +0.2 818,635 + -0.0 818,635 + +0.1 818,635 + +0.6 818,661 - +0.1
Or see this region's nucleotide sequence