Experiment: BHIS no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EFB2_00645 and EFB2_00646 are separated by 89 nucleotides EFB2_00646 and EFB2_00647 overlap by 8 nucleotides EFB2_00647 and EFB2_00648 are separated by 227 nucleotides EFB2_00648 and EFB2_00649 are separated by 14 nucleotides
EFB2_00645: EFB2_00645 - ATP-dependent zinc metalloprotease FtsH, at 650,298 to 652,241
_00645
EFB2_00646: EFB2_00646 - Dihydropteroate synthase, at 652,331 to 653,179
_00646
EFB2_00647: EFB2_00647 - Phosphoglucosamine mutase, at 653,172 to 654,509
_00647
EFB2_00648: EFB2_00648 - Protein-export membrane protein SecG, at 654,737 to 655,069
_00648
EFB2_00649: EFB2_00649 - tRNA-Leu, at 655,084 to 655,170
_00649
Position (kb) 653
654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 652.193 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.239 kb on + strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.240 kb on - strand at 652.262 kb on + strand at 652.262 kb on + strand at 652.262 kb on + strand at 652.262 kb on + strand at 652.262 kb on + strand at 652.262 kb on + strand at 652.262 kb on + strand at 652.262 kb on + strand at 652.262 kb on + strand at 652.262 kb on + strand at 652.262 kb on + strand at 652.262 kb on + strand at 652.262 kb on + strand at 652.262 kb on + strand at 652.262 kb on + strand at 652.262 kb on + strand at 652.263 kb on - strand at 652.263 kb on - strand at 652.263 kb on - strand at 652.263 kb on - strand at 652.263 kb on - strand at 652.263 kb on - strand at 652.263 kb on - strand at 652.263 kb on - strand at 652.263 kb on - strand at 652.263 kb on - strand at 652.263 kb on - strand at 652.306 kb on - strand at 652.315 kb on + strand at 652.315 kb on + strand at 652.315 kb on + strand at 652.315 kb on + strand at 652.316 kb on - strand at 652.316 kb on - strand at 652.325 kb on - strand at 652.325 kb on - strand at 654.496 kb on + strand at 654.515 kb on + strand at 654.516 kb on - strand at 654.516 kb on - strand at 654.597 kb on + strand at 654.597 kb on + strand at 654.597 kb on + strand at 654.597 kb on + strand at 654.597 kb on + strand at 654.598 kb on - strand at 654.598 kb on - strand at 654.598 kb on - strand at 654.598 kb on - strand at 654.598 kb on - strand at 654.607 kb on + strand at 654.687 kb on + strand at 654.687 kb on + strand at 654.705 kb on + strand at 654.736 kb on + strand at 654.736 kb on + strand at 654.736 kb on + strand at 654.736 kb on + strand at 654.736 kb on + strand at 654.736 kb on + strand at 654.740 kb on + strand at 654.740 kb on + strand at 654.740 kb on + strand at 654.740 kb on + strand at 654.740 kb on + strand at 654.740 kb on + strand at 654.740 kb on + strand at 654.756 kb on + strand at 654.756 kb on + strand at 654.756 kb on + strand at 654.756 kb on + strand at 654.766 kb on + strand at 654.811 kb on + strand, within EFB2_00648 at 654.811 kb on + strand, within EFB2_00648 at 654.811 kb on + strand, within EFB2_00648 at 654.823 kb on + strand, within EFB2_00648 at 654.823 kb on + strand, within EFB2_00648 at 654.823 kb on + strand, within EFB2_00648 at 654.921 kb on + strand, within EFB2_00648 at 654.921 kb on + strand, within EFB2_00648 at 654.921 kb on + strand, within EFB2_00648 at 654.949 kb on + strand, within EFB2_00648 at 654.958 kb on + strand, within EFB2_00648 at 654.958 kb on + strand, within EFB2_00648 at 654.958 kb on + strand, within EFB2_00648 at 655.042 kb on + strand at 655.067 kb on + strand at 655.067 kb on + strand at 655.077 kb on + strand at 655.241 kb on + strand at 655.241 kb on + strand at 655.241 kb on + strand at 655.241 kb on + strand at 655.241 kb on + strand at 655.241 kb on + strand at 655.242 kb on - strand at 655.242 kb on - strand at 655.242 kb on - strand at 655.242 kb on - strand at 655.242 kb on - strand at 655.242 kb on - strand at 655.242 kb on - strand at 655.242 kb on - strand at 655.247 kb on + strand at 655.247 kb on + strand at 655.248 kb on - strand at 655.248 kb on - strand at 655.265 kb on + strand at 655.271 kb on + strand at 655.271 kb on + strand at 655.271 kb on + strand at 655.271 kb on + strand at 655.271 kb on + strand at 655.272 kb on - strand at 655.272 kb on - strand at 655.278 kb on + strand at 655.279 kb on - strand at 655.307 kb on + strand at 655.307 kb on + strand at 655.307 kb on + strand at 655.307 kb on + strand at 655.308 kb on - strand at 655.308 kb on - strand at 655.308 kb on - strand at 655.308 kb on - strand at 655.308 kb on - strand at 655.308 kb on - strand at 655.308 kb on - strand at 655.308 kb on - strand at 655.311 kb on + strand at 655.311 kb on + strand at 655.311 kb on + strand at 655.311 kb on + strand at 655.311 kb on + strand at 655.311 kb on + strand at 655.312 kb on - strand at 655.312 kb on - strand at 655.312 kb on - strand at 655.312 kb on - strand at 655.312 kb on - strand at 655.312 kb on - strand at 655.312 kb on - strand at 655.312 kb on - strand at 655.313 kb on + strand at 655.313 kb on + strand at 655.313 kb on + strand at 655.313 kb on + strand at 655.314 kb on - strand at 655.314 kb on - strand at 655.314 kb on - strand at 655.314 kb on - strand at 655.336 kb on + strand at 655.336 kb on + strand at 655.337 kb on - strand at 655.337 kb on - strand at 655.337 kb on - strand at 655.337 kb on - strand at 655.337 kb on - strand at 655.337 kb on - strand at 655.337 kb on - strand at 655.337 kb on - strand at 655.337 kb on - strand at 655.337 kb on - strand at 655.348 kb on + strand at 655.348 kb on + strand at 655.349 kb on - strand at 655.384 kb on - strand at 655.384 kb on - strand at 655.389 kb on + strand at 655.421 kb on + strand at 655.421 kb on + strand at 655.422 kb on - strand at 655.422 kb on - strand at 655.422 kb on - strand at 655.422 kb on - strand at 655.422 kb on - strand at 655.422 kb on - strand at 655.422 kb on - strand at 655.423 kb on + strand at 655.423 kb on + strand at 655.423 kb on + strand at 655.424 kb on - strand at 655.424 kb on - strand at 655.424 kb on - strand at 655.424 kb on - strand at 655.427 kb on + strand at 655.428 kb on - strand at 655.428 kb on - strand at 655.428 kb on - strand at 655.428 kb on - strand at 655.448 kb on + strand at 655.455 kb on + strand at 655.469 kb on + strand at 655.475 kb on + strand at 655.479 kb on + strand at 655.483 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS no phage control remove 652,193 + +0.2 652,239 + +0.5 652,239 + +0.3 652,239 + +0.3 652,239 + -2.5 652,239 + -0.4 652,239 + +0.9 652,239 + -0.0 652,239 + +0.7 652,239 + -1.3 652,239 + +1.6 652,239 + -1.1 652,239 + -0.6 652,239 + +0.3 652,239 + -1.8 652,239 + -0.0 652,239 + +2.0 652,239 + -0.4 652,239 + -0.7 652,239 + +0.3 652,239 + +0.8 652,239 + -0.8 652,239 + +1.0 652,239 + -0.6 652,239 + -0.6 652,240 - +0.9 652,240 - +0.5 652,240 - -2.4 652,240 - -0.5 652,240 - +0.4 652,240 - -0.1 652,240 - -0.9 652,240 - +0.2 652,240 - -2.7 652,240 - -0.3 652,240 - +0.7 652,240 - -0.0 652,240 - +0.2 652,240 - -0.3 652,240 - -0.0 652,240 - -1.5 652,240 - -1.1 652,240 - -0.2 652,240 - -2.0 652,240 - +2.2 652,262 + -0.0 652,262 + -1.7 652,262 + +0.4 652,262 + -0.5 652,262 + -1.0 652,262 + +0.1 652,262 + +0.2 652,262 + -1.1 652,262 + +1.3 652,262 + -1.0 652,262 + +0.4 652,262 + +0.6 652,262 + -0.0 652,262 + -0.5 652,262 + +0.2 652,262 + -0.9 652,263 - -1.6 652,263 - +1.3 652,263 - +1.3 652,263 - +0.2 652,263 - -3.2 652,263 - +1.5 652,263 - +1.0 652,263 - +2.0 652,263 - -1.1 652,263 - -0.3 652,263 - -1.6 652,306 - +0.4 652,315 + -0.4 652,315 + -0.9 652,315 + -0.7 652,315 + +0.4 652,316 - +0.3 652,316 - +0.6 652,325 - +1.3 652,325 - +2.2 654,496 + +0.9 654,515 + +0.2 654,516 - -0.8 654,516 - -1.8 654,597 + -1.6 654,597 + +0.6 654,597 + -2.6 654,597 + -0.7 654,597 + -2.5 654,598 - -3.2 654,598 - +0.2 654,598 - -0.1 654,598 - +1.0 654,598 - +1.5 654,607 + +0.3 654,687 + +0.3 654,687 + +0.5 654,705 + -0.6 654,736 + +0.5 654,736 + +0.5 654,736 + -2.7 654,736 + -2.1 654,736 + -1.8 654,736 + -1.0 654,740 + -1.4 654,740 + -1.0 654,740 + +0.9 654,740 + -0.1 654,740 + +3.0 654,740 + -2.1 654,740 + -1.1 654,756 + +1.0 654,756 + -1.5 654,756 + -2.7 654,756 + +0.3 654,766 + -0.3 654,811 + EFB2_00648 0.22 -3.7 654,811 + EFB2_00648 0.22 -0.1 654,811 + EFB2_00648 0.22 -0.2 654,823 + EFB2_00648 0.26 +1.5 654,823 + EFB2_00648 0.26 -0.0 654,823 + EFB2_00648 0.26 +1.3 654,921 + EFB2_00648 0.55 -1.0 654,921 + EFB2_00648 0.55 -0.3 654,921 + EFB2_00648 0.55 -0.9 654,949 + EFB2_00648 0.64 +0.3 654,958 + EFB2_00648 0.66 +0.5 654,958 + EFB2_00648 0.66 -0.6 654,958 + EFB2_00648 0.66 +0.2 655,042 + +0.6 655,067 + -0.4 655,067 + -0.3 655,077 + +0.0 655,241 + -2.0 655,241 + +0.3 655,241 + +0.3 655,241 + +0.4 655,241 + +1.5 655,241 + -0.3 655,242 - +0.4 655,242 - -0.9 655,242 - -0.2 655,242 - -0.9 655,242 - +0.4 655,242 - +0.1 655,242 - +0.8 655,242 - +0.9 655,247 + +0.1 655,247 + -0.2 655,248 - -0.7 655,248 - -1.2 655,265 + -0.5 655,271 + -0.8 655,271 + -1.5 655,271 + -0.6 655,271 + +1.3 655,271 + +1.2 655,272 - +0.2 655,272 - +0.4 655,278 + -0.1 655,279 - -2.5 655,307 + -0.5 655,307 + -1.6 655,307 + -0.9 655,307 + -1.1 655,308 - -1.8 655,308 - +0.2 655,308 - -0.6 655,308 - -2.5 655,308 - +0.6 655,308 - -2.9 655,308 - -1.3 655,308 - -0.8 655,311 + +0.7 655,311 + +0.3 655,311 + +0.8 655,311 + -1.0 655,311 + -1.9 655,311 + +1.0 655,312 - -1.3 655,312 - -0.9 655,312 - +1.0 655,312 - -0.9 655,312 - -0.9 655,312 - -0.3 655,312 - -0.5 655,312 - +1.4 655,313 + -0.6 655,313 + +0.7 655,313 + +0.9 655,313 + -0.5 655,314 - +0.4 655,314 - -0.1 655,314 - +1.9 655,314 - +2.1 655,336 + -0.3 655,336 + +0.3 655,337 - -0.1 655,337 - +0.5 655,337 - +1.5 655,337 - -1.5 655,337 - -0.4 655,337 - -1.6 655,337 - +0.6 655,337 - +0.9 655,337 - +0.3 655,337 - -0.2 655,348 + +0.7 655,348 + +1.0 655,349 - +0.3 655,384 - +0.9 655,384 - +0.5 655,389 + +0.4 655,421 + -0.3 655,421 + -0.9 655,422 - -1.2 655,422 - -2.3 655,422 - -0.1 655,422 - +0.3 655,422 - +0.5 655,422 - -0.2 655,422 - +1.0 655,423 + -1.1 655,423 + -1.0 655,423 + +0.6 655,424 - -0.5 655,424 - -1.1 655,424 - +0.4 655,424 - -0.9 655,427 + -1.0 655,428 - -0.6 655,428 - +0.4 655,428 - +1.3 655,428 - +0.1 655,448 + +0.4 655,455 + +0.0 655,469 + -2.5 655,475 + -0.5 655,479 + +0.7 655,483 + -1.2
Or see this region's nucleotide sequence