Strain Fitness in Escherichia fergusonii Becca around EFB2_00191

Experiment: BHIS no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEFB2_00190 and EFB2_00191 are separated by 3 nucleotidesEFB2_00191 and EFB2_00192 are separated by 9 nucleotides EFB2_00190: EFB2_00190 - Lipopolysaccharide heptosyltransferase 1, at 179,632 to 180,612 _00190 EFB2_00191: EFB2_00191 - ADP-heptose--LPS heptosyltransferase 2, at 180,616 to 181,662 _00191 EFB2_00192: EFB2_00192 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 181,672 to 182,604 _00192 Position (kb) 180 181 182Strain fitness (log2 ratio) -3 -2 -1 0 1at 179.628 kb on + strandat 179.676 kb on + strandat 180.632 kb on - strandat 180.632 kb on - strandat 180.632 kb on - strandat 180.632 kb on - strandat 180.638 kb on - strandat 180.638 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 181.674 kb on - strandat 182.653 kb on - strandat 182.653 kb on - strandat 182.653 kb on - strandat 182.653 kb on - strandat 182.659 kb on - strandat 182.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS no phage control
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179,628 + -0.2
179,676 + -2.0
180,632 - +0.6
180,632 - +0.8
180,632 - -0.5
180,632 - -0.8
180,638 - +0.6
180,638 - -0.9
181,674 - +1.3
181,674 - +0.5
181,674 - +1.1
181,674 - -0.9
181,674 - -0.1
181,674 - +0.4
181,674 - -0.8
181,674 - +0.4
181,674 - +0.9
182,653 - -0.2
182,653 - +0.1
182,653 - -0.5
182,653 - +0.4
182,659 - -1.0
182,659 - -2.9

Or see this region's nucleotide sequence