Strain Fitness in Pseudomonas sp. DMC3 around GFF76

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF75 and GFF76 are separated by 146 nucleotidesGFF76 and GFF77 are separated by 91 nucleotides GFF75 - 8-amino-7-oxononanoate synthase, at 85,554 to 86,732 GFF75 GFF76 - Biotin synthase, at 86,879 to 87,934 GFF76 GFF77 - hypothetical protein, at 88,026 to 88,760 GFF77 Position (kb) 86 87 88Strain fitness (log2 ratio) -2 -1 0 1 2at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.942 kb on + strand, within GFF75at 85.943 kb on - strand, within GFF75at 85.943 kb on - strand, within GFF75at 85.943 kb on - strand, within GFF75at 85.946 kb on + strand, within GFF75at 85.946 kb on + strand, within GFF75at 85.946 kb on + strand, within GFF75at 85.946 kb on + strand, within GFF75at 85.946 kb on + strand, within GFF75at 85.946 kb on + strand, within GFF75at 85.947 kb on - strand, within GFF75at 85.947 kb on - strand, within GFF75at 85.948 kb on + strand, within GFF75at 85.948 kb on + strand, within GFF75at 85.948 kb on + strand, within GFF75at 85.948 kb on + strand, within GFF75at 85.948 kb on + strand, within GFF75at 85.949 kb on - strand, within GFF75at 85.949 kb on - strand, within GFF75at 85.949 kb on - strand, within GFF75at 85.949 kb on - strand, within GFF75at 85.949 kb on - strand, within GFF75at 85.949 kb on - strand, within GFF75at 85.949 kb on - strand, within GFF75at 85.949 kb on - strand, within GFF75at 86.028 kb on - strand, within GFF75at 86.211 kb on + strand, within GFF75at 86.290 kb on + strand, within GFF75at 86.290 kb on + strand, within GFF75at 86.413 kb on + strand, within GFF75at 86.413 kb on + strand, within GFF75at 86.413 kb on + strand, within GFF75at 86.593 kb on + strand, within GFF75at 86.593 kb on + strand, within GFF75at 86.594 kb on - strand, within GFF75at 86.594 kb on - strand, within GFF75at 86.877 kb on + strandat 86.878 kb on - strandat 86.880 kb on + strandat 86.881 kb on - strandat 86.881 kb on - strandat 86.881 kb on - strandat 86.895 kb on + strandat 86.895 kb on + strandat 86.895 kb on + strandat 86.895 kb on + strandat 86.896 kb on - strandat 86.896 kb on - strandat 86.908 kb on + strandat 87.188 kb on - strand, within GFF76at 87.381 kb on + strand, within GFF76at 87.382 kb on - strand, within GFF76at 87.382 kb on - strand, within GFF76at 87.382 kb on - strand, within GFF76at 87.382 kb on - strand, within GFF76at 87.382 kb on - strand, within GFF76at 87.408 kb on + strand, within GFF76at 87.435 kb on + strand, within GFF76at 87.435 kb on + strand, within GFF76at 87.436 kb on - strand, within GFF76at 87.436 kb on - strand, within GFF76at 87.436 kb on - strand, within GFF76at 87.468 kb on + strand, within GFF76at 87.468 kb on + strand, within GFF76at 87.468 kb on + strand, within GFF76at 87.468 kb on + strand, within GFF76at 87.468 kb on + strand, within GFF76at 87.468 kb on + strand, within GFF76at 87.469 kb on - strand, within GFF76at 87.469 kb on - strand, within GFF76at 87.469 kb on - strand, within GFF76at 87.469 kb on - strand, within GFF76at 87.471 kb on + strand, within GFF76at 87.471 kb on + strand, within GFF76at 87.472 kb on - strand, within GFF76at 87.472 kb on - strand, within GFF76at 87.582 kb on + strand, within GFF76at 87.582 kb on + strand, within GFF76at 87.582 kb on + strand, within GFF76at 87.583 kb on - strand, within GFF76at 87.721 kb on - strand, within GFF76at 87.721 kb on - strand, within GFF76at 87.741 kb on + strand, within GFF76at 87.741 kb on + strand, within GFF76at 87.741 kb on + strand, within GFF76at 87.742 kb on - strand, within GFF76at 87.866 kb on + strandat 87.867 kb on - strandat 87.950 kb on + strandat 87.950 kb on + strandat 87.951 kb on - strandat 87.951 kb on - strandat 87.980 kb on + strandat 87.981 kb on - strandat 87.994 kb on - strandat 88.010 kb on + strandat 88.010 kb on + strandat 88.010 kb on + strandat 88.011 kb on - strandat 88.011 kb on - strandat 88.011 kb on - strandat 88.014 kb on + strandat 88.014 kb on + strandat 88.014 kb on + strandat 88.014 kb on + strandat 88.015 kb on - strandat 88.015 kb on - strandat 88.015 kb on - strandat 88.015 kb on - strandat 88.015 kb on - strandat 88.015 kb on - strandat 88.015 kb on - strandat 88.090 kb on + strandat 88.090 kb on + strandat 88.091 kb on - strandat 88.091 kb on - strandat 88.228 kb on + strand, within GFF77at 88.228 kb on + strand, within GFF77at 88.228 kb on + strand, within GFF77at 88.228 kb on + strand, within GFF77at 88.229 kb on - strand, within GFF77at 88.269 kb on + strand, within GFF77at 88.270 kb on - strand, within GFF77at 88.270 kb on - strand, within GFF77at 88.270 kb on - strand, within GFF77at 88.295 kb on + strand, within GFF77at 88.295 kb on + strand, within GFF77at 88.360 kb on - strand, within GFF77at 88.360 kb on - strand, within GFF77at 88.651 kb on + strand, within GFF77at 88.651 kb on + strand, within GFF77at 88.651 kb on + strand, within GFF77at 88.651 kb on + strand, within GFF77at 88.651 kb on + strand, within GFF77at 88.652 kb on - strand, within GFF77at 88.658 kb on + strand, within GFF77at 88.725 kb on + strandat 88.725 kb on + strandat 88.725 kb on + strandat 88.725 kb on + strandat 88.725 kb on + strandat 88.725 kb on + strandat 88.725 kb on + strandat 88.725 kb on + strandat 88.725 kb on + strandat 88.726 kb on - strandat 88.726 kb on - strandat 88.726 kb on - strandat 88.767 kb on + strandat 88.767 kb on + strandat 88.768 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
85,942 + GFF75 0.33 -0.8
85,942 + GFF75 0.33 -0.4
85,942 + GFF75 0.33 +0.0
85,942 + GFF75 0.33 +0.2
85,942 + GFF75 0.33 -0.1
85,942 + GFF75 0.33 -0.1
85,942 + GFF75 0.33 -0.8
85,942 + GFF75 0.33 +0.7
85,942 + GFF75 0.33 -2.4
85,942 + GFF75 0.33 +0.3
85,942 + GFF75 0.33 -1.1
85,943 - GFF75 0.33 -0.8
85,943 - GFF75 0.33 +0.4
85,943 - GFF75 0.33 +0.7
85,946 + GFF75 0.33 -0.1
85,946 + GFF75 0.33 +0.3
85,946 + GFF75 0.33 +0.0
85,946 + GFF75 0.33 -0.5
85,946 + GFF75 0.33 +0.5
85,946 + GFF75 0.33 -0.7
85,947 - GFF75 0.33 -0.4
85,947 - GFF75 0.33 +0.1
85,948 + GFF75 0.33 -0.4
85,948 + GFF75 0.33 +0.4
85,948 + GFF75 0.33 -0.4
85,948 + GFF75 0.33 +1.2
85,948 + GFF75 0.33 -0.2
85,949 - GFF75 0.34 +0.3
85,949 - GFF75 0.34 -0.2
85,949 - GFF75 0.34 +0.5
85,949 - GFF75 0.34 -0.8
85,949 - GFF75 0.34 -0.9
85,949 - GFF75 0.34 -0.0
85,949 - GFF75 0.34 +0.0
85,949 - GFF75 0.34 +0.2
86,028 - GFF75 0.40 -0.9
86,211 + GFF75 0.56 -0.2
86,290 + GFF75 0.62 -1.4
86,290 + GFF75 0.62 +0.0
86,413 + GFF75 0.73 -1.2
86,413 + GFF75 0.73 +0.5
86,413 + GFF75 0.73 +0.6
86,593 + GFF75 0.88 +0.7
86,593 + GFF75 0.88 +0.2
86,594 - GFF75 0.88 +0.0
86,594 - GFF75 0.88 +0.3
86,877 + +0.8
86,878 - +0.8
86,880 + +0.4
86,881 - -0.6
86,881 - -1.1
86,881 - +0.5
86,895 + +0.4
86,895 + -0.5
86,895 + -0.1
86,895 + +0.1
86,896 - -0.3
86,896 - +0.2
86,908 + -1.4
87,188 - GFF76 0.29 -0.6
87,381 + GFF76 0.48 -0.2
87,382 - GFF76 0.48 +0.4
87,382 - GFF76 0.48 +0.6
87,382 - GFF76 0.48 -0.5
87,382 - GFF76 0.48 -0.5
87,382 - GFF76 0.48 +0.5
87,408 + GFF76 0.50 -1.1
87,435 + GFF76 0.53 +0.3
87,435 + GFF76 0.53 -0.6
87,436 - GFF76 0.53 +1.2
87,436 - GFF76 0.53 -0.8
87,436 - GFF76 0.53 +0.5
87,468 + GFF76 0.56 -0.2
87,468 + GFF76 0.56 +1.0
87,468 + GFF76 0.56 +0.9
87,468 + GFF76 0.56 -0.5
87,468 + GFF76 0.56 -1.6
87,468 + GFF76 0.56 +0.2
87,469 - GFF76 0.56 -1.0
87,469 - GFF76 0.56 +0.1
87,469 - GFF76 0.56 +0.2
87,469 - GFF76 0.56 -0.2
87,471 + GFF76 0.56 -0.9
87,471 + GFF76 0.56 -1.0
87,472 - GFF76 0.56 -0.2
87,472 - GFF76 0.56 -0.6
87,582 + GFF76 0.67 +1.0
87,582 + GFF76 0.67 -1.6
87,582 + GFF76 0.67 -0.5
87,583 - GFF76 0.67 +0.8
87,721 - GFF76 0.80 -0.6
87,721 - GFF76 0.80 -1.5
87,741 + GFF76 0.82 +1.2
87,741 + GFF76 0.82 +0.9
87,741 + GFF76 0.82 -0.3
87,742 - GFF76 0.82 +0.1
87,866 + +1.1
87,867 - -1.6
87,950 + -0.0
87,950 + +1.3
87,951 - +0.9
87,951 - +0.0
87,980 + -0.5
87,981 - +0.2
87,994 - -0.6
88,010 + -0.6
88,010 + +0.5
88,010 + +0.5
88,011 - +1.0
88,011 - -1.4
88,011 - -0.2
88,014 + -0.2
88,014 + +0.4
88,014 + +0.6
88,014 + +0.8
88,015 - +1.6
88,015 - -0.2
88,015 - +1.5
88,015 - +0.2
88,015 - -0.6
88,015 - +1.1
88,015 - +0.8
88,090 + +0.4
88,090 + +0.8
88,091 - -0.5
88,091 - +0.2
88,228 + GFF77 0.27 +0.3
88,228 + GFF77 0.27 -2.2
88,228 + GFF77 0.27 +0.1
88,228 + GFF77 0.27 -0.1
88,229 - GFF77 0.28 +0.4
88,269 + GFF77 0.33 +0.1
88,270 - GFF77 0.33 +0.5
88,270 - GFF77 0.33 +0.5
88,270 - GFF77 0.33 +0.6
88,295 + GFF77 0.37 -0.1
88,295 + GFF77 0.37 -0.0
88,360 - GFF77 0.45 +0.2
88,360 - GFF77 0.45 -0.2
88,651 + GFF77 0.85 +1.1
88,651 + GFF77 0.85 +0.5
88,651 + GFF77 0.85 -1.1
88,651 + GFF77 0.85 +0.1
88,651 + GFF77 0.85 +0.4
88,652 - GFF77 0.85 +0.3
88,658 + GFF77 0.86 -1.0
88,725 + -0.2
88,725 + +0.1
88,725 + +0.1
88,725 + +0.5
88,725 + -0.6
88,725 + +2.7
88,725 + +0.6
88,725 + -0.3
88,725 + -0.2
88,726 - +1.3
88,726 - -0.1
88,726 - -0.9
88,767 + +0.2
88,767 + -0.6
88,768 - -0.1

Or see this region's nucleotide sequence