Strain Fitness in Pseudomonas sp. DMC3 around GFF5065

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5064 and GFF5065 are separated by 277 nucleotidesGFF5065 and GFF5066 are separated by 27 nucleotides GFF5064 - hypothetical protein, at 49,436 to 50,788 GFF5064 GFF5065 - hypothetical protein, at 51,066 to 52,493 GFF5065 GFF5066 - hypothetical protein, at 52,521 to 53,585 GFF5066 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1 2at 50.130 kb on - strand, within GFF5064at 50.162 kb on - strand, within GFF5064at 50.180 kb on + strand, within GFF5064at 50.180 kb on + strand, within GFF5064at 50.180 kb on + strand, within GFF5064at 50.180 kb on + strand, within GFF5064at 50.261 kb on + strand, within GFF5064at 50.261 kb on + strand, within GFF5064at 50.261 kb on + strand, within GFF5064at 50.262 kb on - strand, within GFF5064at 50.262 kb on - strand, within GFF5064at 50.438 kb on + strand, within GFF5064at 50.439 kb on - strand, within GFF5064at 50.458 kb on + strand, within GFF5064at 50.466 kb on - strand, within GFF5064at 50.477 kb on + strand, within GFF5064at 50.477 kb on + strand, within GFF5064at 50.478 kb on - strand, within GFF5064at 50.478 kb on - strand, within GFF5064at 50.634 kb on - strand, within GFF5064at 50.839 kb on - strandat 50.964 kb on - strandat 50.993 kb on - strandat 50.993 kb on - strandat 51.347 kb on + strand, within GFF5065at 51.463 kb on - strand, within GFF5065at 51.507 kb on + strand, within GFF5065at 51.507 kb on + strand, within GFF5065at 51.507 kb on + strand, within GFF5065at 51.508 kb on - strand, within GFF5065at 51.574 kb on - strand, within GFF5065at 52.047 kb on + strand, within GFF5065at 52.047 kb on + strand, within GFF5065at 52.047 kb on + strand, within GFF5065at 52.047 kb on + strand, within GFF5065at 52.159 kb on - strand, within GFF5065at 52.491 kb on + strandat 52.495 kb on + strandat 52.538 kb on - strandat 52.641 kb on + strand, within GFF5066at 52.642 kb on - strand, within GFF5066at 52.642 kb on - strand, within GFF5066at 52.947 kb on + strand, within GFF5066at 52.947 kb on + strand, within GFF5066at 52.947 kb on + strand, within GFF5066at 52.947 kb on + strand, within GFF5066at 52.947 kb on + strand, within GFF5066at 52.947 kb on + strand, within GFF5066at 52.947 kb on + strand, within GFF5066at 52.947 kb on + strand, within GFF5066at 52.947 kb on + strand, within GFF5066at 52.948 kb on - strand, within GFF5066at 52.948 kb on - strand, within GFF5066at 52.948 kb on - strand, within GFF5066at 52.948 kb on - strand, within GFF5066at 52.948 kb on - strand, within GFF5066at 52.948 kb on - strand, within GFF5066at 52.948 kb on - strand, within GFF5066at 53.001 kb on + strand, within GFF5066at 53.001 kb on + strand, within GFF5066at 53.002 kb on - strand, within GFF5066at 53.002 kb on - strand, within GFF5066at 53.122 kb on - strand, within GFF5066at 53.162 kb on - strand, within GFF5066at 53.162 kb on - strand, within GFF5066at 53.397 kb on + strand, within GFF5066at 53.485 kb on - strandat 53.486 kb on + strandat 53.486 kb on + strandat 53.486 kb on + strandat 53.487 kb on - strandat 53.490 kb on + strandat 53.490 kb on + strandat 53.491 kb on - strandat 53.491 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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50,130 - GFF5064 0.51 -0.0
50,162 - GFF5064 0.54 -0.4
50,180 + GFF5064 0.55 +0.9
50,180 + GFF5064 0.55 -0.3
50,180 + GFF5064 0.55 -1.1
50,180 + GFF5064 0.55 -1.0
50,261 + GFF5064 0.61 -0.3
50,261 + GFF5064 0.61 -0.3
50,261 + GFF5064 0.61 +0.3
50,262 - GFF5064 0.61 +0.2
50,262 - GFF5064 0.61 +0.3
50,438 + GFF5064 0.74 +0.1
50,439 - GFF5064 0.74 +1.1
50,458 + GFF5064 0.76 +1.1
50,466 - GFF5064 0.76 -0.4
50,477 + GFF5064 0.77 +1.5
50,477 + GFF5064 0.77 -1.4
50,478 - GFF5064 0.77 +1.0
50,478 - GFF5064 0.77 +0.0
50,634 - GFF5064 0.89 +0.0
50,839 - +0.3
50,964 - -1.0
50,993 - +0.8
50,993 - -0.5
51,347 + GFF5065 0.20 -0.5
51,463 - GFF5065 0.28 -0.4
51,507 + GFF5065 0.31 -0.1
51,507 + GFF5065 0.31 -1.1
51,507 + GFF5065 0.31 +0.2
51,508 - GFF5065 0.31 +0.6
51,574 - GFF5065 0.36 -1.1
52,047 + GFF5065 0.69 +1.4
52,047 + GFF5065 0.69 +1.2
52,047 + GFF5065 0.69 -0.4
52,047 + GFF5065 0.69 +0.3
52,159 - GFF5065 0.77 +0.2
52,491 + +1.1
52,495 + +0.8
52,538 - +1.4
52,641 + GFF5066 0.11 -0.0
52,642 - GFF5066 0.11 +0.2
52,642 - GFF5066 0.11 -2.1
52,947 + GFF5066 0.40 +0.8
52,947 + GFF5066 0.40 +0.2
52,947 + GFF5066 0.40 -0.4
52,947 + GFF5066 0.40 +1.1
52,947 + GFF5066 0.40 +0.2
52,947 + GFF5066 0.40 +0.3
52,947 + GFF5066 0.40 +0.9
52,947 + GFF5066 0.40 -1.2
52,947 + GFF5066 0.40 +0.7
52,948 - GFF5066 0.40 +0.2
52,948 - GFF5066 0.40 -0.3
52,948 - GFF5066 0.40 -0.3
52,948 - GFF5066 0.40 -0.1
52,948 - GFF5066 0.40 -1.7
52,948 - GFF5066 0.40 +1.0
52,948 - GFF5066 0.40 -0.3
53,001 + GFF5066 0.45 -0.3
53,001 + GFF5066 0.45 +0.5
53,002 - GFF5066 0.45 -0.4
53,002 - GFF5066 0.45 -0.8
53,122 - GFF5066 0.56 +1.1
53,162 - GFF5066 0.60 -0.1
53,162 - GFF5066 0.60 +1.9
53,397 + GFF5066 0.82 -0.5
53,485 - +0.7
53,486 + +0.3
53,486 + +0.8
53,486 + -0.4
53,487 - -0.2
53,490 + -0.3
53,490 + -0.5
53,491 - -1.4
53,491 - +0.4

Or see this region's nucleotide sequence