Strain Fitness in Pseudomonas sp. DMC3 around GFF4173

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4172 and GFF4173 are separated by 90 nucleotidesGFF4173 and GFF4174 are separated by 2 nucleotidesGFF4174 and GFF4175 are separated by 108 nucleotides GFF4172 - hypothetical protein, at 137,095 to 138,237 GFF4172 GFF4173 - hypothetical protein, at 138,328 to 138,888 GFF4173 GFF4174 - hypothetical protein, at 138,891 to 139,178 GFF4174 GFF4175 - Phosphoenolpyruvate carboxykinase (ATP), at 139,287 to 140,828 GFF4175 Position (kb) 138 139Strain fitness (log2 ratio) -2 -1 0 1at 137.355 kb on + strand, within GFF4172at 137.410 kb on - strand, within GFF4172at 137.481 kb on + strand, within GFF4172at 137.485 kb on + strand, within GFF4172at 137.556 kb on + strand, within GFF4172at 137.610 kb on + strand, within GFF4172at 137.611 kb on - strand, within GFF4172at 137.611 kb on - strand, within GFF4172at 137.611 kb on - strand, within GFF4172at 137.611 kb on - strand, within GFF4172at 137.653 kb on - strand, within GFF4172at 137.653 kb on - strand, within GFF4172at 137.664 kb on + strand, within GFF4172at 137.665 kb on - strand, within GFF4172at 137.665 kb on - strand, within GFF4172at 137.665 kb on - strand, within GFF4172at 137.743 kb on + strand, within GFF4172at 137.743 kb on + strand, within GFF4172at 137.743 kb on + strand, within GFF4172at 137.743 kb on + strand, within GFF4172at 137.744 kb on - strand, within GFF4172at 137.744 kb on - strand, within GFF4172at 137.744 kb on - strand, within GFF4172at 137.755 kb on + strand, within GFF4172at 137.755 kb on + strand, within GFF4172at 137.756 kb on - strand, within GFF4172at 137.830 kb on + strand, within GFF4172at 137.831 kb on - strand, within GFF4172at 137.831 kb on - strand, within GFF4172at 138.010 kb on - strand, within GFF4172at 138.082 kb on + strand, within GFF4172at 138.082 kb on + strand, within GFF4172at 138.083 kb on - strand, within GFF4172at 138.083 kb on - strand, within GFF4172at 138.083 kb on - strand, within GFF4172at 138.083 kb on - strand, within GFF4172at 138.083 kb on - strand, within GFF4172at 138.083 kb on - strand, within GFF4172at 138.083 kb on - strand, within GFF4172at 138.083 kb on - strand, within GFF4172at 138.088 kb on + strand, within GFF4172at 138.089 kb on - strand, within GFF4172at 138.089 kb on - strand, within GFF4172at 138.089 kb on - strand, within GFF4172at 138.118 kb on + strand, within GFF4172at 138.118 kb on + strand, within GFF4172at 138.119 kb on - strand, within GFF4172at 138.119 kb on - strand, within GFF4172at 138.119 kb on - strand, within GFF4172at 138.119 kb on - strand, within GFF4172at 138.172 kb on + strandat 138.173 kb on - strandat 138.211 kb on - strandat 138.290 kb on - strandat 138.337 kb on + strandat 138.337 kb on + strandat 138.337 kb on + strandat 138.337 kb on + strandat 138.337 kb on + strandat 138.337 kb on + strandat 138.338 kb on - strandat 138.338 kb on - strandat 138.338 kb on - strandat 138.338 kb on - strandat 138.339 kb on + strandat 138.340 kb on - strandat 138.340 kb on - strandat 138.340 kb on - strandat 138.392 kb on + strand, within GFF4173at 138.393 kb on - strand, within GFF4173at 138.400 kb on + strand, within GFF4173at 138.401 kb on - strand, within GFF4173at 138.401 kb on - strand, within GFF4173at 138.401 kb on - strand, within GFF4173at 138.401 kb on - strand, within GFF4173at 138.401 kb on - strand, within GFF4173at 138.401 kb on - strand, within GFF4173at 138.465 kb on + strand, within GFF4173at 138.465 kb on + strand, within GFF4173at 138.611 kb on + strand, within GFF4173at 138.611 kb on + strand, within GFF4173at 138.612 kb on - strand, within GFF4173at 138.620 kb on + strand, within GFF4173at 138.620 kb on + strand, within GFF4173at 138.621 kb on - strand, within GFF4173at 138.621 kb on - strand, within GFF4173at 138.638 kb on - strand, within GFF4173at 138.675 kb on + strand, within GFF4173at 138.675 kb on + strand, within GFF4173at 138.686 kb on + strand, within GFF4173at 138.686 kb on + strand, within GFF4173at 138.686 kb on + strand, within GFF4173at 138.687 kb on - strand, within GFF4173at 138.687 kb on - strand, within GFF4173at 138.711 kb on + strand, within GFF4173at 138.711 kb on + strand, within GFF4173at 138.712 kb on - strand, within GFF4173at 138.712 kb on - strand, within GFF4173at 138.766 kb on + strand, within GFF4173at 138.766 kb on + strand, within GFF4173at 138.766 kb on + strand, within GFF4173at 138.766 kb on + strand, within GFF4173at 138.766 kb on + strand, within GFF4173at 138.766 kb on + strand, within GFF4173at 138.767 kb on - strand, within GFF4173at 138.767 kb on - strand, within GFF4173at 138.767 kb on - strand, within GFF4173at 138.767 kb on - strand, within GFF4173at 138.767 kb on - strand, within GFF4173at 138.769 kb on + strand, within GFF4173at 138.770 kb on - strand, within GFF4173at 138.770 kb on - strand, within GFF4173at 138.812 kb on - strand, within GFF4173at 138.812 kb on - strand, within GFF4173at 138.837 kb on + strandat 138.886 kb on + strandat 138.886 kb on + strandat 138.886 kb on + strandat 138.991 kb on + strand, within GFF4174at 138.991 kb on + strand, within GFF4174at 138.991 kb on + strand, within GFF4174at 138.992 kb on - strand, within GFF4174at 138.992 kb on - strand, within GFF4174at 138.992 kb on - strand, within GFF4174at 138.999 kb on - strand, within GFF4174at 139.123 kb on + strand, within GFF4174at 139.123 kb on + strand, within GFF4174at 139.123 kb on + strand, within GFF4174at 139.124 kb on - strand, within GFF4174at 139.124 kb on - strand, within GFF4174at 139.124 kb on - strand, within GFF4174at 139.124 kb on - strand, within GFF4174at 139.139 kb on + strand, within GFF4174at 139.140 kb on - strand, within GFF4174at 139.140 kb on - strand, within GFF4174at 139.183 kb on + strandat 139.183 kb on + strandat 139.183 kb on + strandat 139.183 kb on + strandat 139.183 kb on + strandat 139.184 kb on - strandat 139.184 kb on - strandat 139.184 kb on - strandat 139.239 kb on + strandat 139.267 kb on + strandat 139.268 kb on - strandat 139.288 kb on + strandat 139.288 kb on + strandat 139.288 kb on + strandat 139.289 kb on - strandat 139.289 kb on - strandat 139.603 kb on + strand, within GFF4175at 139.603 kb on + strand, within GFF4175at 139.604 kb on - strand, within GFF4175at 139.604 kb on - strand, within GFF4175at 139.652 kb on - strand, within GFF4175at 139.774 kb on + strand, within GFF4175at 139.775 kb on - strand, within GFF4175

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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137,355 + GFF4172 0.23 +0.2
137,410 - GFF4172 0.28 -1.1
137,481 + GFF4172 0.34 -0.4
137,485 + GFF4172 0.34 -1.3
137,556 + GFF4172 0.40 -0.2
137,610 + GFF4172 0.45 +0.2
137,611 - GFF4172 0.45 -0.5
137,611 - GFF4172 0.45 +0.2
137,611 - GFF4172 0.45 +0.1
137,611 - GFF4172 0.45 -0.9
137,653 - GFF4172 0.49 -1.4
137,653 - GFF4172 0.49 +0.5
137,664 + GFF4172 0.50 +0.8
137,665 - GFF4172 0.50 -0.7
137,665 - GFF4172 0.50 -0.1
137,665 - GFF4172 0.50 -0.1
137,743 + GFF4172 0.57 -1.1
137,743 + GFF4172 0.57 -0.8
137,743 + GFF4172 0.57 -0.6
137,743 + GFF4172 0.57 -0.5
137,744 - GFF4172 0.57 +0.7
137,744 - GFF4172 0.57 -0.6
137,744 - GFF4172 0.57 +0.7
137,755 + GFF4172 0.58 -1.6
137,755 + GFF4172 0.58 -0.1
137,756 - GFF4172 0.58 -0.7
137,830 + GFF4172 0.64 +0.3
137,831 - GFF4172 0.64 +0.7
137,831 - GFF4172 0.64 -2.1
138,010 - GFF4172 0.80 +0.1
138,082 + GFF4172 0.86 +0.8
138,082 + GFF4172 0.86 -0.1
138,083 - GFF4172 0.86 -0.2
138,083 - GFF4172 0.86 +1.0
138,083 - GFF4172 0.86 +0.1
138,083 - GFF4172 0.86 -0.1
138,083 - GFF4172 0.86 -0.7
138,083 - GFF4172 0.86 +0.9
138,083 - GFF4172 0.86 +0.6
138,083 - GFF4172 0.86 -0.5
138,088 + GFF4172 0.87 +1.6
138,089 - GFF4172 0.87 -0.1
138,089 - GFF4172 0.87 -0.1
138,089 - GFF4172 0.87 -0.4
138,118 + GFF4172 0.90 -0.8
138,118 + GFF4172 0.90 -0.5
138,119 - GFF4172 0.90 -0.9
138,119 - GFF4172 0.90 +0.7
138,119 - GFF4172 0.90 -0.6
138,119 - GFF4172 0.90 +0.8
138,172 + +1.1
138,173 - -1.2
138,211 - -0.1
138,290 - -0.1
138,337 + -0.3
138,337 + +0.5
138,337 + -1.2
138,337 + -1.0
138,337 + +0.3
138,337 + +0.7
138,338 - +0.0
138,338 - +0.9
138,338 - -0.6
138,338 - +0.1
138,339 + +1.1
138,340 - -0.1
138,340 - -0.3
138,340 - +0.5
138,392 + GFF4173 0.11 -0.3
138,393 - GFF4173 0.12 -0.1
138,400 + GFF4173 0.13 +0.8
138,401 - GFF4173 0.13 -1.3
138,401 - GFF4173 0.13 +0.4
138,401 - GFF4173 0.13 -0.5
138,401 - GFF4173 0.13 -0.5
138,401 - GFF4173 0.13 -0.8
138,401 - GFF4173 0.13 +0.6
138,465 + GFF4173 0.24 +0.4
138,465 + GFF4173 0.24 +0.2
138,611 + GFF4173 0.50 +0.5
138,611 + GFF4173 0.50 -2.6
138,612 - GFF4173 0.51 +0.5
138,620 + GFF4173 0.52 -0.9
138,620 + GFF4173 0.52 -0.4
138,621 - GFF4173 0.52 -1.3
138,621 - GFF4173 0.52 +0.2
138,638 - GFF4173 0.55 +0.2
138,675 + GFF4173 0.62 -1.7
138,675 + GFF4173 0.62 -1.9
138,686 + GFF4173 0.64 -2.1
138,686 + GFF4173 0.64 -0.5
138,686 + GFF4173 0.64 -1.0
138,687 - GFF4173 0.64 +0.3
138,687 - GFF4173 0.64 -0.6
138,711 + GFF4173 0.68 +0.5
138,711 + GFF4173 0.68 +0.4
138,712 - GFF4173 0.68 -0.3
138,712 - GFF4173 0.68 -0.3
138,766 + GFF4173 0.78 +0.1
138,766 + GFF4173 0.78 +0.1
138,766 + GFF4173 0.78 +0.1
138,766 + GFF4173 0.78 -0.2
138,766 + GFF4173 0.78 -0.5
138,766 + GFF4173 0.78 +0.4
138,767 - GFF4173 0.78 -0.3
138,767 - GFF4173 0.78 +0.1
138,767 - GFF4173 0.78 +0.2
138,767 - GFF4173 0.78 -0.4
138,767 - GFF4173 0.78 -0.1
138,769 + GFF4173 0.79 -1.6
138,770 - GFF4173 0.79 +1.0
138,770 - GFF4173 0.79 -0.3
138,812 - GFF4173 0.86 +0.6
138,812 - GFF4173 0.86 -0.5
138,837 + -0.3
138,886 + -0.4
138,886 + -0.2
138,886 + +0.3
138,991 + GFF4174 0.35 -0.2
138,991 + GFF4174 0.35 -0.4
138,991 + GFF4174 0.35 -1.1
138,992 - GFF4174 0.35 -0.9
138,992 - GFF4174 0.35 +1.4
138,992 - GFF4174 0.35 +0.0
138,999 - GFF4174 0.38 -0.3
139,123 + GFF4174 0.81 -0.7
139,123 + GFF4174 0.81 +0.4
139,123 + GFF4174 0.81 +0.7
139,124 - GFF4174 0.81 -1.3
139,124 - GFF4174 0.81 +0.7
139,124 - GFF4174 0.81 +0.0
139,124 - GFF4174 0.81 -2.1
139,139 + GFF4174 0.86 -1.1
139,140 - GFF4174 0.86 +1.0
139,140 - GFF4174 0.86 -2.1
139,183 + -1.1
139,183 + -0.6
139,183 + +1.7
139,183 + +0.4
139,183 + +0.6
139,184 - -0.5
139,184 - +0.0
139,184 - -0.1
139,239 + -0.4
139,267 + -1.1
139,268 - -0.6
139,288 + -0.7
139,288 + +0.2
139,288 + -0.3
139,289 - -0.0
139,289 - +0.2
139,603 + GFF4175 0.20 +0.4
139,603 + GFF4175 0.20 -0.1
139,604 - GFF4175 0.21 +0.2
139,604 - GFF4175 0.21 -1.8
139,652 - GFF4175 0.24 +0.3
139,774 + GFF4175 0.32 +0.2
139,775 - GFF4175 0.32 -2.1

Or see this region's nucleotide sequence