Strain Fitness in Pseudomonas sp. DMC3 around GFF2080

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2078 and GFF2079 are separated by 43 nucleotidesGFF2079 and GFF2080 overlap by 4 nucleotidesGFF2080 and GFF2081 overlap by 13 nucleotidesGFF2081 and GFF2082 overlap by 1 nucleotides GFF2078 - S-formylglutathione hydrolase YeiG, at 328,248 to 329,093 GFF2078 GFF2079 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 329,137 to 329,610 GFF2079 GFF2080 - tRNA pseudouridine synthase D, at 329,607 to 330,665 GFF2080 GFF2081 - 5'-nucleotidase SurE, at 330,653 to 331,402 GFF2081 GFF2082 - Protein-L-isoaspartate O-methyltransferase, at 331,402 to 332,076 GFF2082 Position (kb) 329 330 331Strain fitness (log2 ratio) -2 -1 0 1 2at 328.620 kb on + strand, within GFF2078at 328.620 kb on + strand, within GFF2078at 328.620 kb on + strand, within GFF2078at 328.620 kb on + strand, within GFF2078at 328.620 kb on + strand, within GFF2078at 328.620 kb on + strand, within GFF2078at 328.620 kb on + strand, within GFF2078at 328.621 kb on - strand, within GFF2078at 328.621 kb on - strand, within GFF2078at 328.621 kb on - strand, within GFF2078at 328.621 kb on - strand, within GFF2078at 328.621 kb on - strand, within GFF2078at 328.621 kb on - strand, within GFF2078at 328.621 kb on - strand, within GFF2078at 328.746 kb on + strand, within GFF2078at 328.747 kb on - strand, within GFF2078at 328.748 kb on + strand, within GFF2078at 328.748 kb on + strand, within GFF2078at 328.748 kb on + strand, within GFF2078at 328.749 kb on - strand, within GFF2078at 328.821 kb on + strand, within GFF2078at 328.821 kb on + strand, within GFF2078at 328.822 kb on - strand, within GFF2078at 328.867 kb on + strand, within GFF2078at 328.868 kb on - strand, within GFF2078at 329.028 kb on + strandat 329.029 kb on - strandat 329.029 kb on - strandat 329.100 kb on + strandat 329.101 kb on - strandat 329.136 kb on + strandat 329.640 kb on + strandat 329.640 kb on + strandat 329.641 kb on - strandat 329.641 kb on - strandat 329.665 kb on + strandat 329.832 kb on + strand, within GFF2080at 329.833 kb on - strand, within GFF2080at 330.087 kb on + strand, within GFF2080at 330.087 kb on + strand, within GFF2080at 330.177 kb on - strand, within GFF2080at 330.177 kb on - strand, within GFF2080at 330.602 kb on - strandat 330.602 kb on - strandat 330.658 kb on + strandat 330.659 kb on - strandat 330.659 kb on - strandat 330.659 kb on - strandat 330.670 kb on + strandat 330.671 kb on - strandat 330.711 kb on - strandat 330.711 kb on - strandat 330.711 kb on - strandat 330.711 kb on - strandat 330.711 kb on - strandat 330.729 kb on - strand, within GFF2081at 330.815 kb on + strand, within GFF2081at 330.957 kb on - strand, within GFF2081at 330.957 kb on - strand, within GFF2081at 331.061 kb on + strand, within GFF2081at 331.061 kb on + strand, within GFF2081at 331.119 kb on + strand, within GFF2081at 331.119 kb on + strand, within GFF2081at 331.123 kb on + strand, within GFF2081at 331.123 kb on + strand, within GFF2081at 331.123 kb on + strand, within GFF2081at 331.124 kb on - strand, within GFF2081at 331.124 kb on - strand, within GFF2081at 331.124 kb on - strand, within GFF2081at 331.124 kb on - strand, within GFF2081at 331.316 kb on + strand, within GFF2081at 331.316 kb on + strand, within GFF2081at 331.316 kb on + strand, within GFF2081at 331.317 kb on - strand, within GFF2081at 331.317 kb on - strand, within GFF2081at 331.317 kb on - strand, within GFF2081at 331.317 kb on - strand, within GFF2081at 331.483 kb on + strand, within GFF2082at 331.483 kb on + strand, within GFF2082at 331.484 kb on - strand, within GFF2082at 331.515 kb on - strand, within GFF2082at 331.576 kb on + strand, within GFF2082at 331.577 kb on - strand, within GFF2082at 331.577 kb on - strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.628 kb on - strand, within GFF2082at 331.628 kb on - strand, within GFF2082at 331.628 kb on - strand, within GFF2082at 331.628 kb on - strand, within GFF2082at 331.628 kb on - strand, within GFF2082at 331.628 kb on - strand, within GFF2082at 331.628 kb on - strand, within GFF2082at 331.628 kb on - strand, within GFF2082

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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328,620 + GFF2078 0.44 -2.4
328,620 + GFF2078 0.44 -0.1
328,620 + GFF2078 0.44 -0.1
328,620 + GFF2078 0.44 -0.2
328,620 + GFF2078 0.44 +0.6
328,620 + GFF2078 0.44 +1.6
328,620 + GFF2078 0.44 +0.5
328,621 - GFF2078 0.44 -0.3
328,621 - GFF2078 0.44 +0.7
328,621 - GFF2078 0.44 +0.4
328,621 - GFF2078 0.44 -0.2
328,621 - GFF2078 0.44 -0.4
328,621 - GFF2078 0.44 -0.4
328,621 - GFF2078 0.44 -0.1
328,746 + GFF2078 0.59 -0.1
328,747 - GFF2078 0.59 -1.5
328,748 + GFF2078 0.59 -0.3
328,748 + GFF2078 0.59 -0.9
328,748 + GFF2078 0.59 -0.4
328,749 - GFF2078 0.59 -0.1
328,821 + GFF2078 0.68 -0.4
328,821 + GFF2078 0.68 -0.4
328,822 - GFF2078 0.68 -0.2
328,867 + GFF2078 0.73 +0.0
328,868 - GFF2078 0.73 -0.2
329,028 + -0.1
329,029 - -1.2
329,029 - -0.7
329,100 + -0.1
329,101 - +0.9
329,136 + +0.6
329,640 + -0.2
329,640 + +0.2
329,641 - -0.3
329,641 - +0.2
329,665 + +0.6
329,832 + GFF2080 0.21 -1.5
329,833 - GFF2080 0.21 -0.6
330,087 + GFF2080 0.45 -0.8
330,087 + GFF2080 0.45 +0.6
330,177 - GFF2080 0.54 -0.8
330,177 - GFF2080 0.54 +0.3
330,602 - -0.4
330,602 - -0.1
330,658 + +0.1
330,659 - +0.2
330,659 - -1.7
330,659 - -1.1
330,670 + +0.3
330,671 - -0.2
330,711 - +0.8
330,711 - +0.9
330,711 - -0.0
330,711 - +1.2
330,711 - -1.0
330,729 - GFF2081 0.10 -1.5
330,815 + GFF2081 0.22 +1.3
330,957 - GFF2081 0.41 -1.5
330,957 - GFF2081 0.41 +0.2
331,061 + GFF2081 0.54 -0.4
331,061 + GFF2081 0.54 -1.5
331,119 + GFF2081 0.62 -0.8
331,119 + GFF2081 0.62 -0.0
331,123 + GFF2081 0.63 +1.3
331,123 + GFF2081 0.63 -1.0
331,123 + GFF2081 0.63 +0.6
331,124 - GFF2081 0.63 +0.2
331,124 - GFF2081 0.63 -0.8
331,124 - GFF2081 0.63 -0.3
331,124 - GFF2081 0.63 -0.3
331,316 + GFF2081 0.88 -0.2
331,316 + GFF2081 0.88 -0.7
331,316 + GFF2081 0.88 +0.5
331,317 - GFF2081 0.89 -0.1
331,317 - GFF2081 0.89 +0.3
331,317 - GFF2081 0.89 +0.2
331,317 - GFF2081 0.89 +0.3
331,483 + GFF2082 0.12 +1.0
331,483 + GFF2082 0.12 +0.6
331,484 - GFF2082 0.12 -0.2
331,515 - GFF2082 0.17 -0.3
331,576 + GFF2082 0.26 +1.0
331,577 - GFF2082 0.26 -0.5
331,577 - GFF2082 0.26 +1.2
331,627 + GFF2082 0.33 +1.2
331,627 + GFF2082 0.33 -0.6
331,627 + GFF2082 0.33 -1.1
331,627 + GFF2082 0.33 -1.1
331,627 + GFF2082 0.33 +1.0
331,627 + GFF2082 0.33 -0.8
331,627 + GFF2082 0.33 -1.0
331,627 + GFF2082 0.33 -0.2
331,627 + GFF2082 0.33 +0.4
331,628 - GFF2082 0.33 -0.4
331,628 - GFF2082 0.33 +2.0
331,628 - GFF2082 0.33 +0.2
331,628 - GFF2082 0.33 +0.6
331,628 - GFF2082 0.33 -0.4
331,628 - GFF2082 0.33 -1.0
331,628 - GFF2082 0.33 -0.3
331,628 - GFF2082 0.33 -1.4

Or see this region's nucleotide sequence