Strain Fitness in Escherichia coli ECRC101 around MCAODC_24140

Experiment: Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas09
1,554,528	-	gfcD	MCAODC_24135	0.60	-0.3
1,554,528	-	gfcD	MCAODC_24135	0.60	-2.1
1,554,545	+	gfcD	MCAODC_24135	0.61	-1.3
1,554,549	+	gfcD	MCAODC_24135	0.61	+2.7
1,554,549	+	gfcD	MCAODC_24135	0.61	-1.0
1,554,600	+	gfcD	MCAODC_24135	0.63	-5.2
1,554,601	-	gfcD	MCAODC_24135	0.63	-1.9
1,554,601	-	gfcD	MCAODC_24135	0.63	-1.6
1,554,683	+	gfcD	MCAODC_24135	0.67	-2.4
1,554,687	+	gfcD	MCAODC_24135	0.68	-1.5
1,554,696	+	gfcD	MCAODC_24135	0.68	-2.8
1,554,696	+	gfcD	MCAODC_24135	0.68	-1.1
1,554,696	+	gfcD	MCAODC_24135	0.68	-1.7
1,554,768	+	gfcD	MCAODC_24135	0.71	-2.6
1,554,823	+	gfcD	MCAODC_24135	0.74	-2.1
1,554,824	-	gfcD	MCAODC_24135	0.74	-1.1
1,554,837	+	gfcD	MCAODC_24135	0.75	-3.6
1,554,849	+	gfcD	MCAODC_24135	0.75	-0.3
1,554,873	+	gfcD	MCAODC_24135	0.76	-3.4
1,554,873	+	gfcD	MCAODC_24135	0.76	-2.7
1,554,900	+	gfcD	MCAODC_24135	0.78	-2.2
1,554,945	+	gfcD	MCAODC_24135	0.80	-0.7
1,554,946	-	gfcD	MCAODC_24135	0.80	-2.1
1,555,074	+	gfcD	MCAODC_24135	0.86	-0.8
1,555,169	+				-2.0
1,555,170	-				-3.0
1,555,170	-				-1.9
1,555,196	+				-2.2
1,555,199	+				-2.7
1,555,211	+				-1.1
1,555,247	+				+1.0
1,555,375	+				-2.1
1,555,388	+				-2.9
1,555,475	+				-0.3
1,555,476	-				-5.0
1,555,528	+	gfcE	MCAODC_24140	0.10	-2.2
1,555,528	+	gfcE	MCAODC_24140	0.10	-1.3
1,555,565	+	gfcE	MCAODC_24140	0.13	-3.0
1,555,565	+	gfcE	MCAODC_24140	0.13	-2.1
1,555,565	+	gfcE	MCAODC_24140	0.13	-1.7
1,555,565	+	gfcE	MCAODC_24140	0.13	-0.9
1,555,565	+	gfcE	MCAODC_24140	0.13	-2.1
1,555,569	+	gfcE	MCAODC_24140	0.14	-3.5
1,555,616	+	gfcE	MCAODC_24140	0.18	-0.9
1,555,616	+	gfcE	MCAODC_24140	0.18	-2.7
1,555,659	+	gfcE	MCAODC_24140	0.22	-1.6
1,555,659	+	gfcE	MCAODC_24140	0.22	-3.2
1,555,660	-	gfcE	MCAODC_24140	0.22	+1.7
1,555,665	+	gfcE	MCAODC_24140	0.22	-0.3
1,555,720	+	gfcE	MCAODC_24140	0.27	-0.6
1,555,740	+	gfcE	MCAODC_24140	0.29	-3.6
1,555,800	+	gfcE	MCAODC_24140	0.34	-2.3
1,555,800	+	gfcE	MCAODC_24140	0.34	-2.3
1,555,803	-	gfcE	MCAODC_24140	0.34	-0.3
1,555,803	-	gfcE	MCAODC_24140	0.34	-3.1
1,555,803	-	gfcE	MCAODC_24140	0.34	-1.7
1,555,835	+	gfcE	MCAODC_24140	0.37	-1.9
1,555,836	-	gfcE	MCAODC_24140	0.37	-0.6
1,555,932	+	gfcE	MCAODC_24140	0.46	+0.7
1,555,933	-	gfcE	MCAODC_24140	0.46	-0.9
1,556,071	+	gfcE	MCAODC_24140	0.58	-4.4
1,556,091	+	gfcE	MCAODC_24140	0.59	-1.6
1,556,152	+	gfcE	MCAODC_24140	0.65	-1.5
1,556,156	+	gfcE	MCAODC_24140	0.65	-0.6
1,556,237	+	gfcE	MCAODC_24140	0.72	-1.5
1,556,273	+	gfcE	MCAODC_24140	0.75	-0.9
1,556,354	+	gfcE	MCAODC_24140	0.83	-1.5
1,556,354	+	gfcE	MCAODC_24140	0.83	-2.5
1,556,358	+	gfcE	MCAODC_24140	0.83	-1.7
1,556,358	+	gfcE	MCAODC_24140	0.83	-2.0
1,556,433	+	gfcE	MCAODC_24140	0.89	-0.9
1,556,434	-	gfcE	MCAODC_24140	0.90	+0.7
1,556,434	-	gfcE	MCAODC_24140	0.90	-0.6
1,556,434	-	gfcE	MCAODC_24140	0.90	+1.7
1,556,673	+	etp	MCAODC_24145	0.30	-2.7
1,556,673	+	etp	MCAODC_24145	0.30	-2.4
1,556,749	+	etp	MCAODC_24145	0.47	-2.7
1,556,749	+	etp	MCAODC_24145	0.47	-1.6
1,556,777	+	etp	MCAODC_24145	0.53	-0.6
1,556,809	+	etp	MCAODC_24145	0.60	-1.5
1,556,809	+	etp	MCAODC_24145	0.60	-1.6
1,556,810	-	etp	MCAODC_24145	0.60	-1.9
1,556,821	+	etp	MCAODC_24145	0.63	+0.1
1,556,933	+	etp	MCAODC_24145	0.88	-2.8
1,556,997	+				-0.3
1,557,002	+				-1.9
1,557,107	+				-1.1
1,557,107	+				-1.7
1,557,147	+				+0.7
1,557,148	-				-1.6
1,557,148	-				+1.7
1,557,157	+				+0.1
1,557,182	+				-2.7
1,557,182	+				-2.8
1,557,182	+				-1.3
1,557,239	+	etk	MCAODC_24150	0.11	-3.1
1,557,239	+	etk	MCAODC_24150	0.11	-4.8
1,557,239	+	etk	MCAODC_24150	0.11	-0.3
1,557,240	-	etk	MCAODC_24150	0.11	+1.7
1,557,248	+	etk	MCAODC_24150	0.11	-3.5
1,557,354	+	etk	MCAODC_24150	0.16	-0.3
1,557,494	+	etk	MCAODC_24150	0.22	-3.1
1,557,494	+	etk	MCAODC_24150	0.22	-2.5
1,557,495	-	etk	MCAODC_24150	0.22	-1.6