Strain Fitness in Escherichia coli ECRC101 around MCAODC_20010

Experiment: Bas09

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMCAODC_20000 and MCAODC_20005 are separated by 42 nucleotidesMCAODC_20005 and MCAODC_20010 are separated by 4 nucleotidesMCAODC_20010 and tnp-IS3 are separated by 319 nucleotidestnp-IS3 and tnp-IS3 overlap by 1 nucleotides MCAODC_20000: MCAODC_20000 - SAR-endolysin, at 821,285 to 821,818 _20000 MCAODC_20005: MCAODC_20005 - DUF1327 domain-containing protein, at 821,861 to 822,193 _20005 MCAODC_20010: MCAODC_20010 - lysis protein, at 822,198 to 822,404 _20010 MCAODC_20015: tnp-IS3 - IS3 family transposase, at 822,724 to 823,050 tnp-IS3 MCAODC_20020: tnp-IS3 - IS3 family transposase, at 823,050 to 823,937 tnp-IS3 Position (kb) 822 823Strain fitness (log2 ratio) -2 -1 0 1 2at 821.346 kb on + strand, within MCAODC_20000at 821.539 kb on + strand, within MCAODC_20000at 821.569 kb on + strand, within MCAODC_20000at 821.694 kb on + strand, within MCAODC_20000at 822.444 kb on + strandat 822.570 kb on - strandat 822.582 kb on - strandat 822.582 kb on - strandat 822.582 kb on - strandat 822.628 kb on + strandat 822.628 kb on + strandat 822.630 kb on + strandat 822.630 kb on + strandat 822.630 kb on + strandat 822.630 kb on + strandat 822.630 kb on + strandat 822.630 kb on + strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.634 kb on + strandat 822.634 kb on + strandat 822.634 kb on + strandat 822.634 kb on + strandat 822.635 kb on - strandat 822.635 kb on - strandat 822.635 kb on - strandat 822.635 kb on - strandat 822.652 kb on + strandat 822.652 kb on + strandat 822.653 kb on - strandat 822.661 kb on + strandat 822.697 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
remove
821,346 + MCAODC_20000 0.11 +2.6
821,539 + MCAODC_20000 0.48 -0.4
821,569 + MCAODC_20000 0.53 +1.6
821,694 + MCAODC_20000 0.77 +0.6
822,444 + +1.6
822,570 - -0.9
822,582 - -0.4
822,582 - -2.5
822,582 - +1.6
822,628 + -0.8
822,628 + -0.1
822,630 + -2.1
822,630 + -1.5
822,630 + -0.7
822,630 + +1.6
822,630 + -0.6
822,630 + +0.8
822,631 - -0.7
822,631 - +1.5
822,631 - -0.6
822,631 - -0.8
822,631 - +0.5
822,631 - -1.3
822,631 - -1.4
822,634 + +1.2
822,634 + -0.2
822,634 + +0.1
822,634 + +0.6
822,635 - +0.0
822,635 - -1.2
822,635 - +0.0
822,635 - -2.3
822,652 + +0.3
822,652 + -0.9
822,653 - -1.2
822,661 + -0.2
822,697 - -1.1

Or see this region's nucleotide sequence