Strain Fitness in Escherichia coli ECRC101 around MCAODC_19970

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgpA1 and MCAODC_19970 are separated by 58 nucleotidesMCAODC_19970 and nu1 overlap by 29 nucleotides MCAODC_19965: gpA1 - Phage terminase, large subunit GpA, at 816,438 to 818,024 gpA1 MCAODC_19970: MCAODC_19970 - Terminase large subunit of prophage CP-933O, at 818,083 to 818,367 _19970 MCAODC_19975: nu1 - terminase, at 818,339 to 818,848 nu1 Position (kb) 818 819Strain fitness (log2 ratio) -1 0 1at 819.317 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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819,317 + -0.6

Or see this region's nucleotide sequence