Strain Fitness in Escherichia coli ECRC101 around MCAODC_19385

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntxerD and MCAODC_19385 are separated by 5 nucleotidesMCAODC_19385 and MCAODC_19390 are separated by 29 nucleotidesMCAODC_19390 and MCAODC_19395 are separated by 15 nucleotides MCAODC_19380: xerD - integrase, at 722,395 to 723,396 xerD MCAODC_19385: MCAODC_19385 - DUF2511 domain-containing protein, at 723,402 to 723,749 _19385 MCAODC_19390: MCAODC_19390 - Putative transmembrane protein, at 723,779 to 724,429 _19390 MCAODC_19395: MCAODC_19395 - transcriptional regulator, at 724,445 to 724,849 _19395 Position (kb) 723 724Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 722.438 kb on - strandat 722.470 kb on - strandat 722.470 kb on - strandat 722.488 kb on - strandat 722.561 kb on - strand, within xerDat 722.573 kb on - strand, within xerDat 722.631 kb on - strand, within xerDat 722.631 kb on - strand, within xerDat 722.631 kb on - strand, within xerDat 722.631 kb on - strand, within xerDat 722.879 kb on - strand, within xerDat 722.990 kb on - strand, within xerDat 722.990 kb on - strand, within xerDat 722.990 kb on - strand, within xerDat 722.994 kb on - strand, within xerDat 723.081 kb on + strand, within xerDat 723.188 kb on + strand, within xerDat 723.188 kb on + strand, within xerDat 723.189 kb on - strand, within xerDat 723.189 kb on - strand, within xerDat 723.261 kb on + strand, within xerDat 723.284 kb on + strand, within xerDat 723.285 kb on - strand, within xerDat 723.370 kb on - strandat 723.407 kb on + strandat 723.407 kb on + strandat 723.476 kb on + strand, within MCAODC_19385at 723.477 kb on - strand, within MCAODC_19385at 723.501 kb on - strand, within MCAODC_19385at 723.505 kb on - strand, within MCAODC_19385at 723.562 kb on - strand, within MCAODC_19385at 723.562 kb on - strand, within MCAODC_19385at 723.570 kb on - strand, within MCAODC_19385at 723.675 kb on - strand, within MCAODC_19385at 723.869 kb on + strand, within MCAODC_19390at 724.062 kb on - strand, within MCAODC_19390at 724.074 kb on - strand, within MCAODC_19390at 724.103 kb on - strand, within MCAODC_19390at 724.145 kb on - strand, within MCAODC_19390at 724.163 kb on - strand, within MCAODC_19390at 724.211 kb on - strand, within MCAODC_19390at 724.243 kb on + strand, within MCAODC_19390at 724.337 kb on - strand, within MCAODC_19390at 724.351 kb on - strand, within MCAODC_19390at 724.351 kb on - strand, within MCAODC_19390at 724.444 kb on - strandat 724.457 kb on - strandat 724.468 kb on - strandat 724.468 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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722,438 - +0.3
722,470 - -0.2
722,470 - +0.0
722,488 - +1.6
722,561 - xerD MCAODC_19380 0.17 +1.1
722,573 - xerD MCAODC_19380 0.18 +0.6
722,631 - xerD MCAODC_19380 0.24 +0.6
722,631 - xerD MCAODC_19380 0.24 +0.5
722,631 - xerD MCAODC_19380 0.24 -0.3
722,631 - xerD MCAODC_19380 0.24 -1.4
722,879 - xerD MCAODC_19380 0.48 +0.6
722,990 - xerD MCAODC_19380 0.59 -2.1
722,990 - xerD MCAODC_19380 0.59 +1.2
722,990 - xerD MCAODC_19380 0.59 +1.2
722,994 - xerD MCAODC_19380 0.60 +0.5
723,081 + xerD MCAODC_19380 0.68 +0.6
723,188 + xerD MCAODC_19380 0.79 -0.6
723,188 + xerD MCAODC_19380 0.79 -1.0
723,189 - xerD MCAODC_19380 0.79 -0.0
723,189 - xerD MCAODC_19380 0.79 +0.0
723,261 + xerD MCAODC_19380 0.86 +0.4
723,284 + xerD MCAODC_19380 0.89 +0.7
723,285 - xerD MCAODC_19380 0.89 +1.0
723,370 - +0.4
723,407 + +0.7
723,407 + -1.0
723,476 + MCAODC_19385 0.21 +0.2
723,477 - MCAODC_19385 0.22 -0.4
723,501 - MCAODC_19385 0.28 -0.7
723,505 - MCAODC_19385 0.30 -1.7
723,562 - MCAODC_19385 0.46 -1.2
723,562 - MCAODC_19385 0.46 +0.6
723,570 - MCAODC_19385 0.48 +0.5
723,675 - MCAODC_19385 0.78 +0.5
723,869 + MCAODC_19390 0.14 +0.0
724,062 - MCAODC_19390 0.43 -2.1
724,074 - MCAODC_19390 0.45 +0.0
724,103 - MCAODC_19390 0.50 +0.0
724,145 - MCAODC_19390 0.56 +0.9
724,163 - MCAODC_19390 0.59 +0.1
724,211 - MCAODC_19390 0.66 -0.4
724,243 + MCAODC_19390 0.71 +0.7
724,337 - MCAODC_19390 0.86 -0.5
724,351 - MCAODC_19390 0.88 -0.1
724,351 - MCAODC_19390 0.88 +3.9
724,444 - +0.8
724,457 - +4.2
724,468 - +1.0
724,468 - +0.9

Or see this region's nucleotide sequence