Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydjO and cedA are separated by 288 nucleotides cedA and katE are separated by 182 nucleotides katE and chbG are separated by 46 nucleotides chbG and celF are separated by 12 nucleotides
MCAODC_18410: ydjO - Uncharacterized protein YdjO, at 541,358 to 542,113
ydjO
MCAODC_18415: cedA - cell division activator CedA, at 542,402 to 542,665
cedA
MCAODC_18420: katE - catalase HPII, at 542,848 to 545,109
katE
MCAODC_18425: chbG - chitin disaccharide deacetylase, at 545,156 to 545,914
chbG
MCAODC_18430: celF - 6-phospho-beta-glucosidase, at 545,927 to 547,279
celF
Position (kb) 542
543
544
545
546 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 542.293 kb on + strand at 542.393 kb on - strand at 542.393 kb on - strand at 542.505 kb on - strand, within cedA at 542.518 kb on - strand, within cedA at 542.601 kb on + strand, within cedA at 542.601 kb on + strand, within cedA at 542.602 kb on - strand, within cedA at 542.605 kb on + strand, within cedA at 542.606 kb on - strand, within cedA at 542.609 kb on - strand, within cedA at 542.669 kb on - strand at 542.686 kb on + strand at 542.782 kb on + strand at 542.827 kb on + strand at 543.043 kb on - strand at 543.060 kb on - strand at 543.094 kb on - strand, within katE at 543.223 kb on - strand, within katE at 543.268 kb on + strand, within katE at 543.270 kb on + strand, within katE at 543.271 kb on - strand, within katE at 543.332 kb on + strand, within katE at 543.340 kb on - strand, within katE at 543.391 kb on - strand, within katE at 543.416 kb on - strand, within katE at 543.572 kb on - strand, within katE at 543.673 kb on - strand, within katE at 543.714 kb on - strand, within katE at 543.919 kb on - strand, within katE at 544.032 kb on + strand, within katE at 544.033 kb on - strand, within katE at 544.212 kb on + strand, within katE at 544.213 kb on - strand, within katE at 544.300 kb on + strand, within katE at 544.358 kb on - strand, within katE at 544.439 kb on + strand, within katE at 544.460 kb on - strand, within katE at 544.494 kb on + strand, within katE at 544.495 kb on - strand, within katE at 544.668 kb on + strand, within katE at 544.669 kb on - strand, within katE at 544.794 kb on + strand, within katE at 544.796 kb on + strand, within katE at 544.894 kb on + strand at 544.894 kb on + strand at 544.895 kb on - strand at 544.912 kb on + strand at 545.031 kb on + strand at 545.157 kb on + strand at 545.158 kb on - strand at 545.170 kb on - strand at 545.170 kb on - strand at 545.174 kb on - strand at 545.174 kb on - strand at 545.386 kb on - strand, within chbG at 545.430 kb on - strand, within chbG at 545.444 kb on - strand, within chbG at 545.448 kb on - strand, within chbG at 545.528 kb on - strand, within chbG at 545.573 kb on + strand, within chbG at 545.699 kb on - strand, within chbG at 545.723 kb on - strand, within chbG at 545.723 kb on - strand, within chbG at 545.856 kb on + strand at 546.074 kb on - strand, within celF
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 542,293 + -0.6 542,393 - +0.0 542,393 - +3.2 542,505 - cedA MCAODC_18415 0.39 +0.8 542,518 - cedA MCAODC_18415 0.44 +1.2 542,601 + cedA MCAODC_18415 0.75 -1.0 542,601 + cedA MCAODC_18415 0.75 -0.0 542,602 - cedA MCAODC_18415 0.76 -0.9 542,605 + cedA MCAODC_18415 0.77 -0.4 542,606 - cedA MCAODC_18415 0.77 -0.7 542,609 - cedA MCAODC_18415 0.78 +0.6 542,669 - -0.4 542,686 + +2.6 542,782 + +0.0 542,827 + +0.3 543,043 - -0.4 543,060 - +0.1 543,094 - katE MCAODC_18420 0.11 -1.7 543,223 - katE MCAODC_18420 0.17 -0.7 543,268 + katE MCAODC_18420 0.19 +1.6 543,270 + katE MCAODC_18420 0.19 +0.0 543,271 - katE MCAODC_18420 0.19 +0.6 543,332 + katE MCAODC_18420 0.21 +1.6 543,340 - katE MCAODC_18420 0.22 +1.6 543,391 - katE MCAODC_18420 0.24 -1.6 543,416 - katE MCAODC_18420 0.25 -0.2 543,572 - katE MCAODC_18420 0.32 +1.6 543,673 - katE MCAODC_18420 0.36 -0.3 543,714 - katE MCAODC_18420 0.38 +0.2 543,919 - katE MCAODC_18420 0.47 -0.6 544,032 + katE MCAODC_18420 0.52 +1.1 544,033 - katE MCAODC_18420 0.52 -0.3 544,212 + katE MCAODC_18420 0.60 +1.0 544,213 - katE MCAODC_18420 0.60 +0.1 544,300 + katE MCAODC_18420 0.64 +1.6 544,358 - katE MCAODC_18420 0.67 -0.7 544,439 + katE MCAODC_18420 0.70 +0.5 544,460 - katE MCAODC_18420 0.71 +0.6 544,494 + katE MCAODC_18420 0.73 +0.6 544,495 - katE MCAODC_18420 0.73 -1.2 544,668 + katE MCAODC_18420 0.80 +0.0 544,669 - katE MCAODC_18420 0.81 +1.2 544,794 + katE MCAODC_18420 0.86 -0.1 544,796 + katE MCAODC_18420 0.86 +0.6 544,894 + -0.4 544,894 + -0.4 544,895 - +0.7 544,912 + +1.6 545,031 + +2.1 545,157 + +1.9 545,158 - -0.4 545,170 - +0.5 545,170 - +1.6 545,174 - +0.6 545,174 - +0.0 545,386 - chbG MCAODC_18425 0.30 +0.4 545,430 - chbG MCAODC_18425 0.36 +0.6 545,444 - chbG MCAODC_18425 0.38 -0.2 545,448 - chbG MCAODC_18425 0.38 -1.0 545,528 - chbG MCAODC_18425 0.49 +0.6 545,573 + chbG MCAODC_18425 0.55 -0.2 545,699 - chbG MCAODC_18425 0.72 -0.2 545,723 - chbG MCAODC_18425 0.75 -0.4 545,723 - chbG MCAODC_18425 0.75 -2.0 545,856 + +0.3 546,074 - celF MCAODC_18430 0.11 -0.9
Or see this region's nucleotide sequence