Strain Fitness in Escherichia coli ECRC101 around MCAODC_16530

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnarU and espR1 are separated by 305 nucleotidesespR1 and MCAODC_16535 are separated by 62 nucleotidesMCAODC_16535 and MCAODC_16540 are separated by 122 nucleotides MCAODC_16525: narU - nitrate/nitrite transporter NarU, at 199,481 to 200,869 narU MCAODC_16530: espR1 - T3SS effector leucine-rich repeat protein EspR1, at 201,175 to 202,434 espR1 MCAODC_16535: MCAODC_16535 - leucine Rich Repeat family protein, at 202,497 to 203,129 _16535 MCAODC_16540: MCAODC_16540 - IpaH-like protein, at 203,252 to 203,755 _16540 Position (kb) 201 202 203Strain fitness (log2 ratio) -1 0 1 2 3 4at 200.343 kb on - strand, within narUat 200.369 kb on - strand, within narUat 200.537 kb on - strand, within narUat 200.710 kb on + strand, within narUat 200.779 kb on + strandat 200.886 kb on - strandat 200.948 kb on + strandat 200.988 kb on - strandat 201.087 kb on + strandat 201.361 kb on - strand, within espR1at 201.372 kb on - strand, within espR1

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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200,343 - narU MCAODC_16525 0.62 +0.3
200,369 - narU MCAODC_16525 0.64 -0.8
200,537 - narU MCAODC_16525 0.76 +1.3
200,710 + narU MCAODC_16525 0.88 +0.2
200,779 + -1.2
200,886 - +3.9
200,948 + +0.6
200,988 - +1.6
201,087 + +1.9
201,361 - espR1 MCAODC_16530 0.15 +0.4
201,372 - espR1 MCAODC_16530 0.16 -0.1

Or see this region's nucleotide sequence