Strain Fitness in Escherichia coli ECRC101 around MCAODC_16150

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynbE and MCAODC_16150 overlap by 4 nucleotidesMCAODC_16150 and ydbL are separated by 7 nucleotidesydbL and MCAODC_16160 are separated by 413 nucleotides MCAODC_16145: ynbE - YdbH family protein, at 118,116 to 120,755 ynbE MCAODC_16150: MCAODC_16150 - YnbE family lipoprotein, at 120,752 to 120,937 _16150 MCAODC_16155: ydbL - DUF1318 domain-containing protein, at 120,945 to 121,268 ydbL MCAODC_16160: MCAODC_16160 - surface-exposed virulence protein BigA, at 121,682 to 124,717 _16160 Position (kb) 120 121Strain fitness (log2 ratio) -2 -1 0 1at 119.752 kb on + strand, within ynbEat 119.752 kb on + strand, within ynbEat 119.802 kb on - strand, within ynbEat 119.849 kb on - strand, within ynbEat 119.904 kb on + strand, within ynbEat 119.904 kb on + strand, within ynbEat 119.905 kb on - strand, within ynbEat 119.996 kb on + strand, within ynbEat 120.229 kb on + strand, within ynbEat 120.229 kb on + strand, within ynbEat 120.229 kb on + strand, within ynbEat 120.233 kb on + strand, within ynbEat 120.234 kb on - strand, within ynbEat 120.320 kb on + strand, within ynbEat 120.461 kb on + strand, within ynbEat 120.536 kb on + strandat 120.618 kb on + strandat 120.787 kb on + strand, within MCAODC_16150at 120.851 kb on - strand, within MCAODC_16150at 120.965 kb on - strandat 121.160 kb on + strand, within ydbLat 121.161 kb on - strand, within ydbLat 121.620 kb on + strandat 121.783 kb on + strandat 121.783 kb on + strandat 121.934 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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119,752 + ynbE MCAODC_16145 0.62 -0.2
119,752 + ynbE MCAODC_16145 0.62 -0.8
119,802 - ynbE MCAODC_16145 0.64 -0.4
119,849 - ynbE MCAODC_16145 0.66 -0.0
119,904 + ynbE MCAODC_16145 0.68 -0.2
119,904 + ynbE MCAODC_16145 0.68 -0.8
119,905 - ynbE MCAODC_16145 0.68 +0.7
119,996 + ynbE MCAODC_16145 0.71 +0.2
120,229 + ynbE MCAODC_16145 0.80 +0.9
120,229 + ynbE MCAODC_16145 0.80 +1.2
120,229 + ynbE MCAODC_16145 0.80 -0.0
120,233 + ynbE MCAODC_16145 0.80 +0.6
120,234 - ynbE MCAODC_16145 0.80 +1.6
120,320 + ynbE MCAODC_16145 0.83 -0.0
120,461 + ynbE MCAODC_16145 0.89 -0.2
120,536 + +0.4
120,618 + -2.0
120,787 + MCAODC_16150 0.19 +1.0
120,851 - MCAODC_16150 0.53 -0.4
120,965 - +0.2
121,160 + ydbL MCAODC_16155 0.66 -0.2
121,161 - ydbL MCAODC_16155 0.67 +1.3
121,620 + -0.5
121,783 + +1.6
121,783 + -0.4
121,934 - -0.1

Or see this region's nucleotide sequence