Strain Fitness in Escherichia coli ECRC101 around MCAODC_11555

Experiment: Bas09

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMCAODC_11550 and MCAODC_11555 are separated by 90 nucleotidesMCAODC_11555 and MCAODC_11570 are separated by 240 nucleotides MCAODC_11550: MCAODC_11550 - Membrane protein, at 2,297,479 to 2,298,222 _11550 MCAODC_11555: MCAODC_11555 - hypothetical protein, at 2,298,313 to 2,298,642 _11555 MCAODC_11570: MCAODC_11570 - DUF1737 domain-containing protein, at 2,298,883 to 2,300,736 _11570 Position (kb) 2298 2299Strain fitness (log2 ratio) -1 0 1 2at 2297.321 kb on + strandat 2297.344 kb on + strandat 2297.367 kb on - strandat 2297.380 kb on + strandat 2297.380 kb on + strandat 2297.380 kb on + strandat 2297.391 kb on + strandat 2297.391 kb on + strandat 2297.412 kb on - strandat 2298.486 kb on + strand, within MCAODC_11555at 2299.005 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
remove
2,297,321 + -0.9
2,297,344 + -0.6
2,297,367 - -0.0
2,297,380 + +0.6
2,297,380 + +2.7
2,297,380 + -0.9
2,297,391 + -0.8
2,297,391 + +2.1
2,297,412 - +0.4
2,298,486 + MCAODC_11555 0.52 +0.4
2,299,005 + -0.9

Or see this region's nucleotide sequence