Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fadA and fre are separated by 191 nucleotides fre and ubiD are separated by 45 nucleotides
MCAODC_04755: fadA - acetyl-CoA C-acyltransferase FadA, at 961,258 to 962,421
fadA
MCAODC_04760: fre - NAD(P)H-flavin reductase, at 962,613 to 963,314
fre
MCAODC_04765: ubiD - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 963,360 to 964,853
ubiD
Position (kb) 962
963
964 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 961.617 kb on + strand, within fadA at 961.725 kb on + strand, within fadA at 961.726 kb on - strand, within fadA at 961.726 kb on - strand, within fadA at 961.870 kb on - strand, within fadA at 961.870 kb on - strand, within fadA at 961.870 kb on - strand, within fadA at 961.874 kb on - strand, within fadA at 961.951 kb on - strand, within fadA at 962.033 kb on + strand, within fadA at 962.033 kb on + strand, within fadA at 962.034 kb on - strand, within fadA at 962.034 kb on - strand, within fadA at 962.040 kb on + strand, within fadA at 962.041 kb on - strand, within fadA at 962.041 kb on - strand, within fadA at 962.211 kb on + strand, within fadA at 962.211 kb on + strand, within fadA at 962.211 kb on + strand, within fadA at 962.212 kb on - strand, within fadA at 962.212 kb on - strand, within fadA at 962.212 kb on - strand, within fadA at 962.212 kb on - strand, within fadA at 962.214 kb on + strand, within fadA at 962.215 kb on - strand, within fadA at 962.215 kb on - strand, within fadA at 962.228 kb on + strand, within fadA at 962.229 kb on - strand, within fadA at 962.377 kb on - strand at 962.377 kb on - strand at 962.419 kb on + strand at 962.419 kb on + strand at 962.479 kb on - strand at 962.488 kb on - strand at 962.541 kb on - strand at 962.546 kb on + strand at 962.547 kb on - strand at 962.547 kb on - strand at 962.547 kb on - strand at 962.547 kb on - strand at 962.560 kb on + strand at 962.568 kb on + strand at 962.607 kb on + strand at 962.607 kb on + strand at 962.608 kb on - strand at 962.608 kb on - strand at 962.619 kb on - strand at 962.661 kb on - strand at 962.661 kb on - strand at 962.661 kb on - strand at 962.719 kb on + strand, within fre at 962.719 kb on + strand, within fre at 962.720 kb on - strand, within fre at 962.720 kb on - strand, within fre at 962.720 kb on - strand, within fre at 962.720 kb on - strand, within fre at 962.720 kb on - strand, within fre at 962.720 kb on - strand, within fre at 962.720 kb on - strand, within fre at 962.723 kb on + strand, within fre at 962.723 kb on + strand, within fre at 962.723 kb on + strand, within fre at 962.723 kb on + strand, within fre at 962.723 kb on + strand, within fre at 962.723 kb on + strand, within fre at 962.724 kb on - strand, within fre at 962.724 kb on - strand, within fre at 962.781 kb on - strand, within fre at 962.875 kb on + strand, within fre at 962.876 kb on - strand, within fre at 962.876 kb on - strand, within fre at 962.965 kb on + strand, within fre at 963.044 kb on + strand, within fre at 963.123 kb on - strand, within fre at 963.123 kb on - strand, within fre at 963.123 kb on - strand, within fre at 963.198 kb on + strand, within fre at 963.198 kb on + strand, within fre at 963.208 kb on + strand, within fre at 963.208 kb on + strand, within fre at 963.259 kb on + strand at 963.259 kb on + strand at 963.260 kb on - strand at 963.260 kb on - strand at 963.261 kb on + strand at 963.261 kb on + strand at 963.261 kb on + strand at 963.262 kb on - strand at 963.262 kb on - strand at 963.262 kb on - strand at 963.262 kb on - strand at 963.262 kb on - strand at 963.262 kb on - strand at 963.262 kb on - strand at 963.262 kb on - strand at 963.275 kb on + strand at 963.282 kb on + strand at 963.283 kb on - strand at 963.283 kb on - strand at 963.296 kb on + strand at 963.296 kb on + strand at 963.303 kb on + strand at 963.303 kb on + strand at 963.340 kb on + strand at 963.341 kb on - strand at 963.372 kb on - strand at 963.380 kb on + strand at 963.380 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 961,617 + fadA MCAODC_04755 0.31 +0.7 961,725 + fadA MCAODC_04755 0.40 +1.9 961,726 - fadA MCAODC_04755 0.40 +0.6 961,726 - fadA MCAODC_04755 0.40 +0.3 961,870 - fadA MCAODC_04755 0.53 -0.9 961,870 - fadA MCAODC_04755 0.53 +1.4 961,870 - fadA MCAODC_04755 0.53 -1.9 961,874 - fadA MCAODC_04755 0.53 +0.7 961,951 - fadA MCAODC_04755 0.60 +0.0 962,033 + fadA MCAODC_04755 0.67 -0.6 962,033 + fadA MCAODC_04755 0.67 -0.9 962,034 - fadA MCAODC_04755 0.67 -0.5 962,034 - fadA MCAODC_04755 0.67 +0.1 962,040 + fadA MCAODC_04755 0.67 -0.8 962,041 - fadA MCAODC_04755 0.67 -0.7 962,041 - fadA MCAODC_04755 0.67 +0.4 962,211 + fadA MCAODC_04755 0.82 +0.2 962,211 + fadA MCAODC_04755 0.82 -0.2 962,211 + fadA MCAODC_04755 0.82 +0.2 962,212 - fadA MCAODC_04755 0.82 +0.4 962,212 - fadA MCAODC_04755 0.82 +0.6 962,212 - fadA MCAODC_04755 0.82 -1.3 962,212 - fadA MCAODC_04755 0.82 +0.5 962,214 + fadA MCAODC_04755 0.82 -0.4 962,215 - fadA MCAODC_04755 0.82 +1.2 962,215 - fadA MCAODC_04755 0.82 -2.0 962,228 + fadA MCAODC_04755 0.83 -0.6 962,229 - fadA MCAODC_04755 0.83 -0.3 962,377 - -0.4 962,377 - +0.7 962,419 + +0.9 962,419 + -0.7 962,479 - +0.6 962,488 - +0.1 962,541 - -0.3 962,546 + -1.3 962,547 - -1.3 962,547 - -0.1 962,547 - +1.4 962,547 - +1.2 962,560 + -0.6 962,568 + -0.7 962,607 + +0.9 962,607 + +0.2 962,608 - +0.2 962,608 - +0.5 962,619 - -1.3 962,661 - +0.1 962,661 - +0.3 962,661 - -2.0 962,719 + fre MCAODC_04760 0.15 -1.4 962,719 + fre MCAODC_04760 0.15 -0.7 962,720 - fre MCAODC_04760 0.15 -2.0 962,720 - fre MCAODC_04760 0.15 +0.7 962,720 - fre MCAODC_04760 0.15 -2.1 962,720 - fre MCAODC_04760 0.15 -1.7 962,720 - fre MCAODC_04760 0.15 -2.1 962,720 - fre MCAODC_04760 0.15 +1.2 962,720 - fre MCAODC_04760 0.15 -0.3 962,723 + fre MCAODC_04760 0.16 -0.7 962,723 + fre MCAODC_04760 0.16 +0.2 962,723 + fre MCAODC_04760 0.16 -0.1 962,723 + fre MCAODC_04760 0.16 -1.6 962,723 + fre MCAODC_04760 0.16 -1.6 962,723 + fre MCAODC_04760 0.16 -0.1 962,724 - fre MCAODC_04760 0.16 -0.2 962,724 - fre MCAODC_04760 0.16 +0.9 962,781 - fre MCAODC_04760 0.24 -0.4 962,875 + fre MCAODC_04760 0.37 -2.8 962,876 - fre MCAODC_04760 0.37 -0.3 962,876 - fre MCAODC_04760 0.37 -0.7 962,965 + fre MCAODC_04760 0.50 -1.4 963,044 + fre MCAODC_04760 0.61 -0.1 963,123 - fre MCAODC_04760 0.73 -1.8 963,123 - fre MCAODC_04760 0.73 +1.3 963,123 - fre MCAODC_04760 0.73 +1.9 963,198 + fre MCAODC_04760 0.83 -1.3 963,198 + fre MCAODC_04760 0.83 -0.7 963,208 + fre MCAODC_04760 0.85 -1.1 963,208 + fre MCAODC_04760 0.85 -0.1 963,259 + +0.1 963,259 + -1.3 963,260 - -2.7 963,260 - -0.7 963,261 + -0.4 963,261 + -1.7 963,261 + +1.7 963,262 - -1.4 963,262 - -1.4 963,262 - -0.4 963,262 - +0.3 963,262 - -0.7 963,262 - +0.3 963,262 - -0.1 963,262 - +1.9 963,275 + -1.1 963,282 + -0.7 963,283 - +1.3 963,283 - +0.3 963,296 + +0.3 963,296 + +0.9 963,303 + -1.7 963,303 + -0.7 963,340 + +0.3 963,341 - +2.2 963,372 - -0.8 963,380 + -1.9 963,380 + -1.4
Or see this region's nucleotide sequence