Strain Fitness in Escherichia coli ECRC101 around MCAODC_03815
Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bas09 |
---|---|---|---|---|---|
remove | |||||
770,417 | - | purH | MCAODC_03810 | 0.38 | +1.2 |
770,478 | + | purH | MCAODC_03810 | 0.42 | -0.5 |
770,490 | + | purH | MCAODC_03810 | 0.42 | +0.3 |
770,491 | - | purH | MCAODC_03810 | 0.42 | +0.6 |
770,491 | - | purH | MCAODC_03810 | 0.42 | -0.2 |
770,530 | + | purH | MCAODC_03810 | 0.45 | +0.8 |
770,530 | + | purH | MCAODC_03810 | 0.45 | -0.2 |
770,530 | + | purH | MCAODC_03810 | 0.45 | -1.0 |
770,530 | + | purH | MCAODC_03810 | 0.45 | -0.8 |
770,530 | + | purH | MCAODC_03810 | 0.45 | +0.5 |
770,531 | - | purH | MCAODC_03810 | 0.45 | -0.3 |
770,531 | - | purH | MCAODC_03810 | 0.45 | -0.2 |
770,531 | - | purH | MCAODC_03810 | 0.45 | -0.3 |
770,531 | - | purH | MCAODC_03810 | 0.45 | -0.2 |
770,531 | - | purH | MCAODC_03810 | 0.45 | -0.4 |
770,531 | - | purH | MCAODC_03810 | 0.45 | -0.0 |
770,531 | - | purH | MCAODC_03810 | 0.45 | +0.0 |
770,531 | - | purH | MCAODC_03810 | 0.45 | -0.2 |
770,531 | - | purH | MCAODC_03810 | 0.45 | -0.7 |
770,531 | - | purH | MCAODC_03810 | 0.45 | +0.4 |
770,531 | - | purH | MCAODC_03810 | 0.45 | -1.9 |
770,531 | - | purH | MCAODC_03810 | 0.45 | +0.6 |
770,531 | - | purH | MCAODC_03810 | 0.45 | -0.8 |
770,532 | + | purH | MCAODC_03810 | 0.45 | -0.1 |
770,533 | - | purH | MCAODC_03810 | 0.45 | +1.5 |
770,534 | + | purH | MCAODC_03810 | 0.45 | -0.3 |
770,534 | + | purH | MCAODC_03810 | 0.45 | -1.7 |
770,534 | + | purH | MCAODC_03810 | 0.45 | -0.4 |
770,534 | + | purH | MCAODC_03810 | 0.45 | +1.1 |
770,535 | - | purH | MCAODC_03810 | 0.45 | -0.0 |
770,535 | - | purH | MCAODC_03810 | 0.45 | -1.3 |
770,535 | - | purH | MCAODC_03810 | 0.45 | -0.5 |
770,535 | - | purH | MCAODC_03810 | 0.45 | +2.3 |
770,535 | - | purH | MCAODC_03810 | 0.45 | +0.6 |
770,599 | + | purH | MCAODC_03810 | 0.49 | +1.2 |
770,599 | + | purH | MCAODC_03810 | 0.49 | +0.3 |
770,599 | + | purH | MCAODC_03810 | 0.49 | +0.2 |
770,600 | - | purH | MCAODC_03810 | 0.49 | -2.4 |
770,602 | - | purH | MCAODC_03810 | 0.49 | +1.9 |
770,602 | - | purH | MCAODC_03810 | 0.49 | +0.2 |
770,602 | - | purH | MCAODC_03810 | 0.49 | -0.4 |
770,602 | - | purH | MCAODC_03810 | 0.49 | +0.5 |
770,725 | + | purH | MCAODC_03810 | 0.57 | +0.1 |
770,726 | - | purH | MCAODC_03810 | 0.57 | +0.9 |
770,726 | - | purH | MCAODC_03810 | 0.57 | -0.0 |
770,738 | - | purH | MCAODC_03810 | 0.58 | +0.9 |
770,900 | + | purH | MCAODC_03810 | 0.68 | -0.7 |
770,900 | + | purH | MCAODC_03810 | 0.68 | +0.2 |
771,108 | + | purH | MCAODC_03810 | 0.81 | -2.0 |
771,109 | - | purH | MCAODC_03810 | 0.81 | -0.1 |
771,109 | - | purH | MCAODC_03810 | 0.81 | -0.2 |
771,115 | + | purH | MCAODC_03810 | 0.82 | -1.7 |
771,192 | + | purH | MCAODC_03810 | 0.87 | -1.3 |
771,364 | - | +0.0 | |||
771,403 | + | +0.6 | |||
771,424 | + | -0.4 | |||
771,424 | + | +0.8 | |||
771,425 | - | +0.1 | |||
771,425 | - | -0.3 | |||
771,425 | - | +1.9 | |||
771,427 | + | -0.3 | |||
771,427 | + | -0.6 | |||
771,427 | + | +1.1 | |||
771,428 | - | +0.9 | |||
771,428 | - | -0.8 | |||
771,610 | + | purD | MCAODC_03815 | 0.15 | +0.9 |
771,610 | + | purD | MCAODC_03815 | 0.15 | -0.3 |
771,611 | - | purD | MCAODC_03815 | 0.15 | +0.0 |
771,611 | - | purD | MCAODC_03815 | 0.15 | -0.0 |
771,611 | - | purD | MCAODC_03815 | 0.15 | -0.0 |
771,617 | - | purD | MCAODC_03815 | 0.16 | +0.3 |
771,617 | - | purD | MCAODC_03815 | 0.16 | +0.1 |
771,737 | + | purD | MCAODC_03815 | 0.25 | -0.6 |
771,738 | - | purD | MCAODC_03815 | 0.25 | +0.9 |
771,761 | + | purD | MCAODC_03815 | 0.27 | -1.5 |
771,762 | - | purD | MCAODC_03815 | 0.27 | +1.5 |
771,816 | + | purD | MCAODC_03815 | 0.31 | -0.8 |
772,008 | - | purD | MCAODC_03815 | 0.46 | -0.1 |
772,082 | + | purD | MCAODC_03815 | 0.52 | -0.5 |
772,113 | + | purD | MCAODC_03815 | 0.54 | +0.0 |
772,114 | - | purD | MCAODC_03815 | 0.54 | +0.0 |
772,114 | - | purD | MCAODC_03815 | 0.54 | +0.2 |
772,114 | - | purD | MCAODC_03815 | 0.54 | +0.9 |
772,166 | + | purD | MCAODC_03815 | 0.58 | -0.6 |
772,166 | + | purD | MCAODC_03815 | 0.58 | -0.4 |
772,166 | + | purD | MCAODC_03815 | 0.58 | -0.3 |
772,166 | + | purD | MCAODC_03815 | 0.58 | -0.0 |
772,166 | + | purD | MCAODC_03815 | 0.58 | -1.0 |
772,167 | - | purD | MCAODC_03815 | 0.58 | +0.5 |
772,167 | - | purD | MCAODC_03815 | 0.58 | +0.5 |
772,167 | - | purD | MCAODC_03815 | 0.58 | +0.1 |
772,167 | - | purD | MCAODC_03815 | 0.58 | +2.7 |
772,212 | + | purD | MCAODC_03815 | 0.62 | -0.2 |
772,212 | + | purD | MCAODC_03815 | 0.62 | -0.2 |
772,212 | + | purD | MCAODC_03815 | 0.62 | +0.4 |
772,227 | + | purD | MCAODC_03815 | 0.63 | +1.0 |
772,278 | - | purD | MCAODC_03815 | 0.67 | -0.2 |
772,314 | - | purD | MCAODC_03815 | 0.70 | +0.1 |
772,372 | + | purD | MCAODC_03815 | 0.74 | +1.3 |
772,621 | - | +1.4 | |||
772,621 | - | -0.1 | |||
772,627 | + | -1.8 | |||
772,704 | + | -0.8 | |||
772,705 | - | -1.2 | |||
772,900 | + | zraR | MCAODC_03820 | 0.15 | -0.6 |
772,901 | - | zraR | MCAODC_03820 | 0.15 | -0.2 |
772,901 | - | zraR | MCAODC_03820 | 0.15 | +0.5 |
772,901 | - | zraR | MCAODC_03820 | 0.15 | +0.6 |
772,901 | - | zraR | MCAODC_03820 | 0.15 | -0.9 |
772,901 | - | zraR | MCAODC_03820 | 0.15 | -0.1 |
772,901 | - | zraR | MCAODC_03820 | 0.15 | -0.1 |
772,958 | - | zraR | MCAODC_03820 | 0.19 | -0.5 |
772,974 | + | zraR | MCAODC_03820 | 0.20 | -1.4 |
772,975 | - | zraR | MCAODC_03820 | 0.21 | -1.0 |
773,006 | - | zraR | MCAODC_03820 | 0.23 | -0.5 |
773,006 | - | zraR | MCAODC_03820 | 0.23 | -1.9 |
773,015 | + | zraR | MCAODC_03820 | 0.24 | -0.1 |
773,016 | - | zraR | MCAODC_03820 | 0.24 | -0.5 |
773,029 | + | zraR | MCAODC_03820 | 0.25 | +0.3 |
773,030 | - | zraR | MCAODC_03820 | 0.25 | +0.1 |
773,030 | - | zraR | MCAODC_03820 | 0.25 | +0.2 |
773,075 | - | zraR | MCAODC_03820 | 0.28 | +0.4 |
773,075 | - | zraR | MCAODC_03820 | 0.28 | +0.9 |
773,102 | + | zraR | MCAODC_03820 | 0.30 | -0.9 |
773,130 | + | zraR | MCAODC_03820 | 0.32 | -0.1 |
773,134 | - | zraR | MCAODC_03820 | 0.33 | -0.9 |
773,218 | + | zraR | MCAODC_03820 | 0.39 | -1.1 |
773,650 | + | zraR | MCAODC_03820 | 0.71 | -0.7 |
773,650 | + | zraR | MCAODC_03820 | 0.71 | +1.9 |
773,651 | - | zraR | MCAODC_03820 | 0.71 | +0.3 |
773,651 | - | zraR | MCAODC_03820 | 0.71 | -1.9 |
773,660 | - | zraR | MCAODC_03820 | 0.72 | -1.1 |
Or see this region's nucleotide sequence