Strain Fitness in Escherichia coli ECRC101 around MCAODC_03815

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpurH and purD are separated by 11 nucleotidespurD and zraR overlap by 4 nucleotides MCAODC_03810: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 769,816 to 771,405 purH MCAODC_03815: purD - Phosphoribosylamine--glycine ligase, at 771,417 to 772,706 purD MCAODC_03820: zraR - sigma-54-dependent response regulator transcription factor ZraR, at 772,703 to 774,028 zraR Position (kb) 771 772 773Strain fitness (log2 ratio) -2 -1 0 1 2at 770.417 kb on - strand, within purHat 770.478 kb on + strand, within purHat 770.490 kb on + strand, within purHat 770.491 kb on - strand, within purHat 770.491 kb on - strand, within purHat 770.530 kb on + strand, within purHat 770.530 kb on + strand, within purHat 770.530 kb on + strand, within purHat 770.530 kb on + strand, within purHat 770.530 kb on + strand, within purHat 770.531 kb on - strand, within purHat 770.531 kb on - strand, within purHat 770.531 kb on - strand, within purHat 770.531 kb on - strand, within purHat 770.531 kb on - strand, within purHat 770.531 kb on - strand, within purHat 770.531 kb on - strand, within purHat 770.531 kb on - strand, within purHat 770.531 kb on - strand, within purHat 770.531 kb on - strand, within purHat 770.531 kb on - strand, within purHat 770.531 kb on - strand, within purHat 770.531 kb on - strand, within purHat 770.532 kb on + strand, within purHat 770.533 kb on - strand, within purHat 770.534 kb on + strand, within purHat 770.534 kb on + strand, within purHat 770.534 kb on + strand, within purHat 770.534 kb on + strand, within purHat 770.535 kb on - strand, within purHat 770.535 kb on - strand, within purHat 770.535 kb on - strand, within purHat 770.535 kb on - strand, within purHat 770.535 kb on - strand, within purHat 770.599 kb on + strand, within purHat 770.599 kb on + strand, within purHat 770.599 kb on + strand, within purHat 770.600 kb on - strand, within purHat 770.602 kb on - strand, within purHat 770.602 kb on - strand, within purHat 770.602 kb on - strand, within purHat 770.602 kb on - strand, within purHat 770.725 kb on + strand, within purHat 770.726 kb on - strand, within purHat 770.726 kb on - strand, within purHat 770.738 kb on - strand, within purHat 770.900 kb on + strand, within purHat 770.900 kb on + strand, within purHat 771.108 kb on + strand, within purHat 771.109 kb on - strand, within purHat 771.109 kb on - strand, within purHat 771.115 kb on + strand, within purHat 771.192 kb on + strand, within purHat 771.364 kb on - strandat 771.403 kb on + strandat 771.424 kb on + strandat 771.424 kb on + strandat 771.425 kb on - strandat 771.425 kb on - strandat 771.425 kb on - strandat 771.427 kb on + strandat 771.427 kb on + strandat 771.427 kb on + strandat 771.428 kb on - strandat 771.428 kb on - strandat 771.610 kb on + strand, within purDat 771.610 kb on + strand, within purDat 771.611 kb on - strand, within purDat 771.611 kb on - strand, within purDat 771.611 kb on - strand, within purDat 771.617 kb on - strand, within purDat 771.617 kb on - strand, within purDat 771.737 kb on + strand, within purDat 771.738 kb on - strand, within purDat 771.761 kb on + strand, within purDat 771.762 kb on - strand, within purDat 771.816 kb on + strand, within purDat 772.008 kb on - strand, within purDat 772.082 kb on + strand, within purDat 772.113 kb on + strand, within purDat 772.114 kb on - strand, within purDat 772.114 kb on - strand, within purDat 772.114 kb on - strand, within purDat 772.166 kb on + strand, within purDat 772.166 kb on + strand, within purDat 772.166 kb on + strand, within purDat 772.166 kb on + strand, within purDat 772.166 kb on + strand, within purDat 772.167 kb on - strand, within purDat 772.167 kb on - strand, within purDat 772.167 kb on - strand, within purDat 772.167 kb on - strand, within purDat 772.212 kb on + strand, within purDat 772.212 kb on + strand, within purDat 772.212 kb on + strand, within purDat 772.227 kb on + strand, within purDat 772.278 kb on - strand, within purDat 772.314 kb on - strand, within purDat 772.372 kb on + strand, within purDat 772.621 kb on - strandat 772.621 kb on - strandat 772.627 kb on + strandat 772.704 kb on + strandat 772.705 kb on - strandat 772.900 kb on + strand, within zraRat 772.901 kb on - strand, within zraRat 772.901 kb on - strand, within zraRat 772.901 kb on - strand, within zraRat 772.901 kb on - strand, within zraRat 772.901 kb on - strand, within zraRat 772.901 kb on - strand, within zraRat 772.958 kb on - strand, within zraRat 772.974 kb on + strand, within zraRat 772.975 kb on - strand, within zraRat 773.006 kb on - strand, within zraRat 773.006 kb on - strand, within zraRat 773.015 kb on + strand, within zraRat 773.016 kb on - strand, within zraRat 773.029 kb on + strand, within zraRat 773.030 kb on - strand, within zraRat 773.030 kb on - strand, within zraRat 773.075 kb on - strand, within zraRat 773.075 kb on - strand, within zraRat 773.102 kb on + strand, within zraRat 773.130 kb on + strand, within zraRat 773.134 kb on - strand, within zraRat 773.218 kb on + strand, within zraRat 773.650 kb on + strand, within zraRat 773.650 kb on + strand, within zraRat 773.651 kb on - strand, within zraRat 773.651 kb on - strand, within zraRat 773.660 kb on - strand, within zraR

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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770,417 - purH MCAODC_03810 0.38 +1.2
770,478 + purH MCAODC_03810 0.42 -0.5
770,490 + purH MCAODC_03810 0.42 +0.3
770,491 - purH MCAODC_03810 0.42 +0.6
770,491 - purH MCAODC_03810 0.42 -0.2
770,530 + purH MCAODC_03810 0.45 +0.8
770,530 + purH MCAODC_03810 0.45 -0.2
770,530 + purH MCAODC_03810 0.45 -1.0
770,530 + purH MCAODC_03810 0.45 -0.8
770,530 + purH MCAODC_03810 0.45 +0.5
770,531 - purH MCAODC_03810 0.45 -0.3
770,531 - purH MCAODC_03810 0.45 -0.2
770,531 - purH MCAODC_03810 0.45 -0.3
770,531 - purH MCAODC_03810 0.45 -0.2
770,531 - purH MCAODC_03810 0.45 -0.4
770,531 - purH MCAODC_03810 0.45 -0.0
770,531 - purH MCAODC_03810 0.45 +0.0
770,531 - purH MCAODC_03810 0.45 -0.2
770,531 - purH MCAODC_03810 0.45 -0.7
770,531 - purH MCAODC_03810 0.45 +0.4
770,531 - purH MCAODC_03810 0.45 -1.9
770,531 - purH MCAODC_03810 0.45 +0.6
770,531 - purH MCAODC_03810 0.45 -0.8
770,532 + purH MCAODC_03810 0.45 -0.1
770,533 - purH MCAODC_03810 0.45 +1.5
770,534 + purH MCAODC_03810 0.45 -0.3
770,534 + purH MCAODC_03810 0.45 -1.7
770,534 + purH MCAODC_03810 0.45 -0.4
770,534 + purH MCAODC_03810 0.45 +1.1
770,535 - purH MCAODC_03810 0.45 -0.0
770,535 - purH MCAODC_03810 0.45 -1.3
770,535 - purH MCAODC_03810 0.45 -0.5
770,535 - purH MCAODC_03810 0.45 +2.3
770,535 - purH MCAODC_03810 0.45 +0.6
770,599 + purH MCAODC_03810 0.49 +1.2
770,599 + purH MCAODC_03810 0.49 +0.3
770,599 + purH MCAODC_03810 0.49 +0.2
770,600 - purH MCAODC_03810 0.49 -2.4
770,602 - purH MCAODC_03810 0.49 +1.9
770,602 - purH MCAODC_03810 0.49 +0.2
770,602 - purH MCAODC_03810 0.49 -0.4
770,602 - purH MCAODC_03810 0.49 +0.5
770,725 + purH MCAODC_03810 0.57 +0.1
770,726 - purH MCAODC_03810 0.57 +0.9
770,726 - purH MCAODC_03810 0.57 -0.0
770,738 - purH MCAODC_03810 0.58 +0.9
770,900 + purH MCAODC_03810 0.68 -0.7
770,900 + purH MCAODC_03810 0.68 +0.2
771,108 + purH MCAODC_03810 0.81 -2.0
771,109 - purH MCAODC_03810 0.81 -0.1
771,109 - purH MCAODC_03810 0.81 -0.2
771,115 + purH MCAODC_03810 0.82 -1.7
771,192 + purH MCAODC_03810 0.87 -1.3
771,364 - +0.0
771,403 + +0.6
771,424 + -0.4
771,424 + +0.8
771,425 - +0.1
771,425 - -0.3
771,425 - +1.9
771,427 + -0.3
771,427 + -0.6
771,427 + +1.1
771,428 - +0.9
771,428 - -0.8
771,610 + purD MCAODC_03815 0.15 +0.9
771,610 + purD MCAODC_03815 0.15 -0.3
771,611 - purD MCAODC_03815 0.15 +0.0
771,611 - purD MCAODC_03815 0.15 -0.0
771,611 - purD MCAODC_03815 0.15 -0.0
771,617 - purD MCAODC_03815 0.16 +0.3
771,617 - purD MCAODC_03815 0.16 +0.1
771,737 + purD MCAODC_03815 0.25 -0.6
771,738 - purD MCAODC_03815 0.25 +0.9
771,761 + purD MCAODC_03815 0.27 -1.5
771,762 - purD MCAODC_03815 0.27 +1.5
771,816 + purD MCAODC_03815 0.31 -0.8
772,008 - purD MCAODC_03815 0.46 -0.1
772,082 + purD MCAODC_03815 0.52 -0.5
772,113 + purD MCAODC_03815 0.54 +0.0
772,114 - purD MCAODC_03815 0.54 +0.0
772,114 - purD MCAODC_03815 0.54 +0.2
772,114 - purD MCAODC_03815 0.54 +0.9
772,166 + purD MCAODC_03815 0.58 -0.6
772,166 + purD MCAODC_03815 0.58 -0.4
772,166 + purD MCAODC_03815 0.58 -0.3
772,166 + purD MCAODC_03815 0.58 -0.0
772,166 + purD MCAODC_03815 0.58 -1.0
772,167 - purD MCAODC_03815 0.58 +0.5
772,167 - purD MCAODC_03815 0.58 +0.5
772,167 - purD MCAODC_03815 0.58 +0.1
772,167 - purD MCAODC_03815 0.58 +2.7
772,212 + purD MCAODC_03815 0.62 -0.2
772,212 + purD MCAODC_03815 0.62 -0.2
772,212 + purD MCAODC_03815 0.62 +0.4
772,227 + purD MCAODC_03815 0.63 +1.0
772,278 - purD MCAODC_03815 0.67 -0.2
772,314 - purD MCAODC_03815 0.70 +0.1
772,372 + purD MCAODC_03815 0.74 +1.3
772,621 - +1.4
772,621 - -0.1
772,627 + -1.8
772,704 + -0.8
772,705 - -1.2
772,900 + zraR MCAODC_03820 0.15 -0.6
772,901 - zraR MCAODC_03820 0.15 -0.2
772,901 - zraR MCAODC_03820 0.15 +0.5
772,901 - zraR MCAODC_03820 0.15 +0.6
772,901 - zraR MCAODC_03820 0.15 -0.9
772,901 - zraR MCAODC_03820 0.15 -0.1
772,901 - zraR MCAODC_03820 0.15 -0.1
772,958 - zraR MCAODC_03820 0.19 -0.5
772,974 + zraR MCAODC_03820 0.20 -1.4
772,975 - zraR MCAODC_03820 0.21 -1.0
773,006 - zraR MCAODC_03820 0.23 -0.5
773,006 - zraR MCAODC_03820 0.23 -1.9
773,015 + zraR MCAODC_03820 0.24 -0.1
773,016 - zraR MCAODC_03820 0.24 -0.5
773,029 + zraR MCAODC_03820 0.25 +0.3
773,030 - zraR MCAODC_03820 0.25 +0.1
773,030 - zraR MCAODC_03820 0.25 +0.2
773,075 - zraR MCAODC_03820 0.28 +0.4
773,075 - zraR MCAODC_03820 0.28 +0.9
773,102 + zraR MCAODC_03820 0.30 -0.9
773,130 + zraR MCAODC_03820 0.32 -0.1
773,134 - zraR MCAODC_03820 0.33 -0.9
773,218 + zraR MCAODC_03820 0.39 -1.1
773,650 + zraR MCAODC_03820 0.71 -0.7
773,650 + zraR MCAODC_03820 0.71 +1.9
773,651 - zraR MCAODC_03820 0.71 +0.3
773,651 - zraR MCAODC_03820 0.71 -1.9
773,660 - zraR MCAODC_03820 0.72 -1.1

Or see this region's nucleotide sequence