Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjbB and metH are separated by 219 nucleotides metH and iclR are separated by 199 nucleotides
MCAODC_03735: yjbB - Uncharacterized protein YjbB, at 748,389 to 750,020
yjbB
MCAODC_03740: metH - methionine synthase, at 750,240 to 753,923
metH
MCAODC_03745: iclR - glyoxylate bypass operon transcriptional repressor IclR, at 754,123 to 754,947
iclR
Position (kb) 750
751
752
753
754 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 749.264 kb on + strand, within yjbB at 749.265 kb on - strand, within yjbB at 749.285 kb on + strand, within yjbB at 749.286 kb on - strand, within yjbB at 749.411 kb on + strand, within yjbB at 749.412 kb on - strand, within yjbB at 749.412 kb on - strand, within yjbB at 749.445 kb on + strand, within yjbB at 749.445 kb on + strand, within yjbB at 749.465 kb on - strand, within yjbB at 749.471 kb on + strand, within yjbB at 749.687 kb on + strand, within yjbB at 749.687 kb on + strand, within yjbB at 749.688 kb on - strand, within yjbB at 749.692 kb on - strand, within yjbB at 749.709 kb on + strand, within yjbB at 749.837 kb on + strand, within yjbB at 749.838 kb on - strand, within yjbB at 749.847 kb on + strand, within yjbB at 749.848 kb on - strand, within yjbB at 749.947 kb on - strand at 749.963 kb on + strand at 749.963 kb on + strand at 749.964 kb on - strand at 749.964 kb on - strand at 749.964 kb on - strand at 750.005 kb on + strand at 750.015 kb on + strand at 750.043 kb on + strand at 750.043 kb on + strand at 750.043 kb on + strand at 750.043 kb on + strand at 750.044 kb on - strand at 750.044 kb on - strand at 750.045 kb on + strand at 750.045 kb on + strand at 750.045 kb on + strand at 750.045 kb on + strand at 750.045 kb on + strand at 750.045 kb on + strand at 750.045 kb on + strand at 750.046 kb on - strand at 750.046 kb on - strand at 750.046 kb on - strand at 750.046 kb on - strand at 750.046 kb on - strand at 750.102 kb on + strand at 750.102 kb on + strand at 750.158 kb on + strand at 750.158 kb on + strand at 750.159 kb on - strand at 750.160 kb on + strand at 750.160 kb on + strand at 750.160 kb on + strand at 750.160 kb on + strand at 750.160 kb on + strand at 750.160 kb on + strand at 750.160 kb on + strand at 750.161 kb on - strand at 750.161 kb on - strand at 750.161 kb on - strand at 750.161 kb on - strand at 750.161 kb on - strand at 750.161 kb on - strand at 750.171 kb on + strand at 750.172 kb on - strand at 750.175 kb on - strand at 750.178 kb on - strand at 750.178 kb on - strand at 750.215 kb on + strand at 750.299 kb on + strand at 750.316 kb on + strand at 750.316 kb on + strand at 750.316 kb on + strand at 750.358 kb on + strand at 750.359 kb on - strand at 750.359 kb on - strand at 750.359 kb on - strand at 750.382 kb on + strand at 750.488 kb on + strand at 750.600 kb on - strand at 750.619 kb on + strand, within metH at 750.676 kb on + strand, within metH at 750.676 kb on + strand, within metH at 750.754 kb on + strand, within metH at 750.754 kb on + strand, within metH at 750.755 kb on - strand, within metH at 750.802 kb on + strand, within metH at 750.802 kb on + strand, within metH at 750.802 kb on + strand, within metH at 750.802 kb on + strand, within metH at 750.802 kb on + strand, within metH at 750.802 kb on + strand, within metH at 750.884 kb on - strand, within metH at 750.963 kb on + strand, within metH at 750.963 kb on + strand, within metH at 750.964 kb on - strand, within metH at 750.968 kb on + strand, within metH at 750.969 kb on - strand, within metH at 750.993 kb on - strand, within metH at 751.093 kb on + strand, within metH at 751.094 kb on - strand, within metH at 751.097 kb on + strand, within metH at 751.097 kb on + strand, within metH at 751.098 kb on - strand, within metH at 751.162 kb on + strand, within metH at 751.163 kb on - strand, within metH at 751.163 kb on - strand, within metH at 751.250 kb on + strand, within metH at 751.250 kb on + strand, within metH at 751.251 kb on - strand, within metH at 751.251 kb on - strand, within metH at 751.251 kb on - strand, within metH at 751.254 kb on + strand, within metH at 751.254 kb on + strand, within metH at 751.254 kb on + strand, within metH at 751.254 kb on + strand, within metH at 751.264 kb on + strand, within metH at 751.357 kb on + strand, within metH at 751.357 kb on + strand, within metH at 751.357 kb on + strand, within metH at 751.357 kb on + strand, within metH at 751.357 kb on + strand, within metH at 751.358 kb on - strand, within metH at 751.358 kb on - strand, within metH at 751.358 kb on - strand, within metH at 751.358 kb on - strand, within metH at 751.376 kb on - strand, within metH at 751.434 kb on + strand, within metH at 751.505 kb on + strand, within metH at 751.600 kb on + strand, within metH at 751.607 kb on + strand, within metH at 751.608 kb on - strand, within metH at 751.608 kb on - strand, within metH at 751.608 kb on - strand, within metH at 751.631 kb on + strand, within metH at 751.632 kb on - strand, within metH at 751.732 kb on + strand, within metH at 751.910 kb on + strand, within metH at 751.910 kb on + strand, within metH at 751.930 kb on + strand, within metH at 751.943 kb on + strand, within metH at 752.012 kb on - strand, within metH at 752.012 kb on - strand, within metH at 752.061 kb on - strand, within metH at 752.144 kb on + strand, within metH at 752.162 kb on + strand, within metH at 752.167 kb on + strand, within metH at 752.167 kb on + strand, within metH at 752.167 kb on + strand, within metH at 752.167 kb on + strand, within metH at 752.167 kb on + strand, within metH at 752.168 kb on - strand, within metH at 752.168 kb on - strand, within metH at 752.168 kb on - strand, within metH at 752.170 kb on + strand, within metH at 752.239 kb on - strand, within metH at 752.311 kb on + strand, within metH at 752.312 kb on - strand, within metH at 752.369 kb on + strand, within metH at 752.369 kb on + strand, within metH at 752.369 kb on + strand, within metH at 752.370 kb on - strand, within metH at 752.410 kb on + strand, within metH at 752.526 kb on - strand, within metH at 752.555 kb on + strand, within metH at 752.556 kb on - strand, within metH at 752.556 kb on - strand, within metH at 752.561 kb on + strand, within metH at 752.562 kb on - strand, within metH at 752.583 kb on - strand, within metH at 752.766 kb on + strand, within metH at 752.786 kb on - strand, within metH at 752.786 kb on - strand, within metH at 752.949 kb on + strand, within metH at 752.972 kb on + strand, within metH at 752.972 kb on + strand, within metH at 752.972 kb on + strand, within metH at 752.972 kb on + strand, within metH at 752.972 kb on + strand, within metH at 752.972 kb on + strand, within metH at 752.972 kb on + strand, within metH at 752.972 kb on + strand, within metH at 752.973 kb on - strand, within metH at 752.973 kb on - strand, within metH at 752.973 kb on - strand, within metH at 752.973 kb on - strand, within metH at 752.973 kb on - strand, within metH at 753.039 kb on + strand, within metH at 753.040 kb on - strand, within metH at 753.121 kb on + strand, within metH at 753.122 kb on - strand, within metH at 753.122 kb on - strand, within metH at 753.155 kb on - strand, within metH at 753.229 kb on + strand, within metH at 753.229 kb on + strand, within metH at 753.229 kb on + strand, within metH at 753.229 kb on + strand, within metH at 753.230 kb on - strand, within metH at 753.230 kb on - strand, within metH at 753.230 kb on - strand, within metH at 753.296 kb on + strand, within metH at 753.297 kb on - strand, within metH at 753.415 kb on - strand, within metH at 753.693 kb on - strand at 753.712 kb on + strand at 753.750 kb on + strand at 753.750 kb on + strand at 753.751 kb on - strand at 753.835 kb on + strand at 753.879 kb on - strand at 753.879 kb on - strand at 753.997 kb on + strand at 754.061 kb on + strand at 754.062 kb on - strand at 754.069 kb on + strand at 754.069 kb on + strand at 754.069 kb on + strand at 754.069 kb on + strand at 754.073 kb on + strand at 754.221 kb on - strand, within iclR at 754.457 kb on + strand, within iclR at 754.535 kb on + strand, within iclR at 754.535 kb on + strand, within iclR at 754.542 kb on + strand, within iclR at 754.542 kb on + strand, within iclR at 754.542 kb on + strand, within iclR at 754.543 kb on - strand, within iclR at 754.619 kb on + strand, within iclR at 754.670 kb on + strand, within iclR at 754.670 kb on + strand, within iclR at 754.670 kb on + strand, within iclR at 754.678 kb on + strand, within iclR at 754.678 kb on + strand, within iclR at 754.680 kb on + strand, within iclR at 754.712 kb on + strand, within iclR at 754.860 kb on + strand, within iclR at 754.860 kb on + strand, within iclR at 754.861 kb on - strand, within iclR at 754.863 kb on + strand, within iclR at 754.863 kb on + strand, within iclR
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 749,264 + yjbB MCAODC_03735 0.54 +0.4 749,265 - yjbB MCAODC_03735 0.54 -0.9 749,285 + yjbB MCAODC_03735 0.55 -0.1 749,286 - yjbB MCAODC_03735 0.55 -0.9 749,411 + yjbB MCAODC_03735 0.63 -0.5 749,412 - yjbB MCAODC_03735 0.63 -0.2 749,412 - yjbB MCAODC_03735 0.63 +2.1 749,445 + yjbB MCAODC_03735 0.65 +0.3 749,445 + yjbB MCAODC_03735 0.65 -0.3 749,465 - yjbB MCAODC_03735 0.66 -0.3 749,471 + yjbB MCAODC_03735 0.66 +0.2 749,687 + yjbB MCAODC_03735 0.80 +1.4 749,687 + yjbB MCAODC_03735 0.80 +0.6 749,688 - yjbB MCAODC_03735 0.80 -0.9 749,692 - yjbB MCAODC_03735 0.80 -0.4 749,709 + yjbB MCAODC_03735 0.81 -1.7 749,837 + yjbB MCAODC_03735 0.89 -0.1 749,838 - yjbB MCAODC_03735 0.89 -0.0 749,847 + yjbB MCAODC_03735 0.89 +0.7 749,848 - yjbB MCAODC_03735 0.89 +0.9 749,947 - +0.7 749,963 + +0.1 749,963 + +0.2 749,964 - +0.2 749,964 - -0.7 749,964 - -0.5 750,005 + +0.6 750,015 + -0.6 750,043 + -1.1 750,043 + +0.6 750,043 + -0.3 750,043 + -0.1 750,044 - -1.6 750,044 - -0.7 750,045 + -0.1 750,045 + -0.4 750,045 + +0.3 750,045 + +0.1 750,045 + +0.3 750,045 + -0.9 750,045 + -0.4 750,046 - +0.3 750,046 - -0.2 750,046 - -0.6 750,046 - -0.6 750,046 - +1.1 750,102 + -0.1 750,102 + +0.2 750,158 + -0.6 750,158 + +0.6 750,159 - -0.1 750,160 + -2.4 750,160 + -0.3 750,160 + -2.2 750,160 + -0.9 750,160 + -0.4 750,160 + -0.9 750,160 + +1.3 750,161 - +0.5 750,161 - +0.1 750,161 - +0.6 750,161 - +1.3 750,161 - -1.2 750,161 - +1.2 750,171 + +0.7 750,172 - -1.8 750,175 - -1.6 750,178 - +0.0 750,178 - +0.9 750,215 + +0.4 750,299 + +0.8 750,316 + -0.8 750,316 + -0.6 750,316 + -0.6 750,358 + +1.2 750,359 - -1.3 750,359 - +0.9 750,359 - -0.1 750,382 + -1.9 750,488 + -1.4 750,600 - -0.0 750,619 + metH MCAODC_03740 0.10 -1.0 750,676 + metH MCAODC_03740 0.12 +0.1 750,676 + metH MCAODC_03740 0.12 -0.4 750,754 + metH MCAODC_03740 0.14 +1.3 750,754 + metH MCAODC_03740 0.14 +1.3 750,755 - metH MCAODC_03740 0.14 +0.9 750,802 + metH MCAODC_03740 0.15 +1.1 750,802 + metH MCAODC_03740 0.15 -1.0 750,802 + metH MCAODC_03740 0.15 -0.4 750,802 + metH MCAODC_03740 0.15 -0.3 750,802 + metH MCAODC_03740 0.15 -1.4 750,802 + metH MCAODC_03740 0.15 -0.4 750,884 - metH MCAODC_03740 0.17 -0.1 750,963 + metH MCAODC_03740 0.20 -1.0 750,963 + metH MCAODC_03740 0.20 -0.6 750,964 - metH MCAODC_03740 0.20 -0.8 750,968 + metH MCAODC_03740 0.20 +0.6 750,969 - metH MCAODC_03740 0.20 -0.6 750,993 - metH MCAODC_03740 0.20 +0.3 751,093 + metH MCAODC_03740 0.23 +0.9 751,094 - metH MCAODC_03740 0.23 -0.4 751,097 + metH MCAODC_03740 0.23 -0.0 751,097 + metH MCAODC_03740 0.23 -0.2 751,098 - metH MCAODC_03740 0.23 -0.7 751,162 + metH MCAODC_03740 0.25 +0.3 751,163 - metH MCAODC_03740 0.25 -0.3 751,163 - metH MCAODC_03740 0.25 -1.4 751,250 + metH MCAODC_03740 0.27 -0.1 751,250 + metH MCAODC_03740 0.27 +0.6 751,251 - metH MCAODC_03740 0.27 -0.2 751,251 - metH MCAODC_03740 0.27 +0.3 751,251 - metH MCAODC_03740 0.27 +0.1 751,254 + metH MCAODC_03740 0.28 +1.3 751,254 + metH MCAODC_03740 0.28 -0.4 751,254 + metH MCAODC_03740 0.28 +0.0 751,254 + metH MCAODC_03740 0.28 +0.9 751,264 + metH MCAODC_03740 0.28 +1.3 751,357 + metH MCAODC_03740 0.30 +1.9 751,357 + metH MCAODC_03740 0.30 +0.1 751,357 + metH MCAODC_03740 0.30 +0.0 751,357 + metH MCAODC_03740 0.30 -0.4 751,357 + metH MCAODC_03740 0.30 +0.9 751,358 - metH MCAODC_03740 0.30 -0.5 751,358 - metH MCAODC_03740 0.30 +0.7 751,358 - metH MCAODC_03740 0.30 +0.2 751,358 - metH MCAODC_03740 0.30 +0.5 751,376 - metH MCAODC_03740 0.31 -0.6 751,434 + metH MCAODC_03740 0.32 +0.3 751,505 + metH MCAODC_03740 0.34 -0.4 751,600 + metH MCAODC_03740 0.37 +0.3 751,607 + metH MCAODC_03740 0.37 +0.4 751,608 - metH MCAODC_03740 0.37 -0.2 751,608 - metH MCAODC_03740 0.37 -0.4 751,608 - metH MCAODC_03740 0.37 +0.5 751,631 + metH MCAODC_03740 0.38 -0.1 751,632 - metH MCAODC_03740 0.38 -0.5 751,732 + metH MCAODC_03740 0.40 +0.1 751,910 + metH MCAODC_03740 0.45 +0.1 751,910 + metH MCAODC_03740 0.45 -1.3 751,930 + metH MCAODC_03740 0.46 -1.0 751,943 + metH MCAODC_03740 0.46 -1.4 752,012 - metH MCAODC_03740 0.48 -0.2 752,012 - metH MCAODC_03740 0.48 -0.3 752,061 - metH MCAODC_03740 0.49 +0.0 752,144 + metH MCAODC_03740 0.52 -1.3 752,162 + metH MCAODC_03740 0.52 -1.3 752,167 + metH MCAODC_03740 0.52 +0.1 752,167 + metH MCAODC_03740 0.52 -1.0 752,167 + metH MCAODC_03740 0.52 -0.1 752,167 + metH MCAODC_03740 0.52 -0.1 752,167 + metH MCAODC_03740 0.52 -0.7 752,168 - metH MCAODC_03740 0.52 -0.7 752,168 - metH MCAODC_03740 0.52 -0.7 752,168 - metH MCAODC_03740 0.52 -0.0 752,170 + metH MCAODC_03740 0.52 -0.5 752,239 - metH MCAODC_03740 0.54 +0.6 752,311 + metH MCAODC_03740 0.56 -0.7 752,312 - metH MCAODC_03740 0.56 -0.4 752,369 + metH MCAODC_03740 0.58 -0.3 752,369 + metH MCAODC_03740 0.58 +1.9 752,369 + metH MCAODC_03740 0.58 +0.4 752,370 - metH MCAODC_03740 0.58 -1.2 752,410 + metH MCAODC_03740 0.59 +0.4 752,526 - metH MCAODC_03740 0.62 +0.7 752,555 + metH MCAODC_03740 0.63 -0.6 752,556 - metH MCAODC_03740 0.63 +0.1 752,556 - metH MCAODC_03740 0.63 -0.4 752,561 + metH MCAODC_03740 0.63 +0.9 752,562 - metH MCAODC_03740 0.63 -0.9 752,583 - metH MCAODC_03740 0.64 +0.7 752,766 + metH MCAODC_03740 0.69 -0.4 752,786 - metH MCAODC_03740 0.69 -0.4 752,786 - metH MCAODC_03740 0.69 +0.1 752,949 + metH MCAODC_03740 0.74 +2.9 752,972 + metH MCAODC_03740 0.74 -1.3 752,972 + metH MCAODC_03740 0.74 +1.9 752,972 + metH MCAODC_03740 0.74 +0.4 752,972 + metH MCAODC_03740 0.74 -0.4 752,972 + metH MCAODC_03740 0.74 -0.6 752,972 + metH MCAODC_03740 0.74 -1.8 752,972 + metH MCAODC_03740 0.74 +0.3 752,972 + metH MCAODC_03740 0.74 +0.7 752,973 - metH MCAODC_03740 0.74 -1.9 752,973 - metH MCAODC_03740 0.74 -0.3 752,973 - metH MCAODC_03740 0.74 -0.7 752,973 - metH MCAODC_03740 0.74 +0.2 752,973 - metH MCAODC_03740 0.74 +0.3 753,039 + metH MCAODC_03740 0.76 -0.1 753,040 - metH MCAODC_03740 0.76 +1.9 753,121 + metH MCAODC_03740 0.78 +1.6 753,122 - metH MCAODC_03740 0.78 +0.3 753,122 - metH MCAODC_03740 0.78 +0.9 753,155 - metH MCAODC_03740 0.79 -0.4 753,229 + metH MCAODC_03740 0.81 +0.9 753,229 + metH MCAODC_03740 0.81 +0.6 753,229 + metH MCAODC_03740 0.81 +0.2 753,229 + metH MCAODC_03740 0.81 +1.9 753,230 - metH MCAODC_03740 0.81 -0.1 753,230 - metH MCAODC_03740 0.81 +0.7 753,230 - metH MCAODC_03740 0.81 +1.1 753,296 + metH MCAODC_03740 0.83 -0.4 753,297 - metH MCAODC_03740 0.83 -2.1 753,415 - metH MCAODC_03740 0.86 -1.0 753,693 - -0.4 753,712 + -0.3 753,750 + -0.2 753,750 + +1.9 753,751 - +0.5 753,835 + -0.1 753,879 - +1.0 753,879 - -1.5 753,997 + +0.7 754,061 + -0.1 754,062 - -0.3 754,069 + +0.9 754,069 + +0.9 754,069 + -0.8 754,069 + -0.8 754,073 + +0.1 754,221 - iclR MCAODC_03745 0.12 +0.9 754,457 + iclR MCAODC_03745 0.40 +0.5 754,535 + iclR MCAODC_03745 0.50 -0.2 754,535 + iclR MCAODC_03745 0.50 +0.2 754,542 + iclR MCAODC_03745 0.51 -1.4 754,542 + iclR MCAODC_03745 0.51 -0.1 754,542 + iclR MCAODC_03745 0.51 +0.7 754,543 - iclR MCAODC_03745 0.51 -0.9 754,619 + iclR MCAODC_03745 0.60 -0.0 754,670 + iclR MCAODC_03745 0.66 -0.3 754,670 + iclR MCAODC_03745 0.66 -0.8 754,670 + iclR MCAODC_03745 0.66 -0.8 754,678 + iclR MCAODC_03745 0.67 -1.0 754,678 + iclR MCAODC_03745 0.67 -0.1 754,680 + iclR MCAODC_03745 0.68 +0.6 754,712 + iclR MCAODC_03745 0.71 +0.2 754,860 + iclR MCAODC_03745 0.89 -0.5 754,860 + iclR MCAODC_03745 0.89 +0.3 754,861 - iclR MCAODC_03745 0.89 -0.1 754,863 + iclR MCAODC_03745 0.90 -0.4 754,863 + iclR MCAODC_03745 0.90 +1.3
Or see this region's nucleotide sequence