Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ulaA and ulaG are separated by 354 nucleotides ulaG and ulaR are separated by 107 nucleotides ulaR and yjfP overlap by 4 nucleotides
MCAODC_02665: ulaA - PTS ascorbate transporter subunit IIC, at 538,961 to 540,358
ulaA
MCAODC_02670: ulaG - L-ascorbate 6-phosphate lactonase, at 540,713 to 541,777
ulaG
MCAODC_02675: ulaR - HTH-type transcriptional regulator UlaR, at 541,885 to 542,640
ulaR
MCAODC_02680: yjfP - esterase, at 542,637 to 543,386
yjfP
Position (kb) 540
541
542 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 539.748 kb on + strand, within ulaA at 539.749 kb on - strand, within ulaA at 539.826 kb on + strand, within ulaA at 539.826 kb on + strand, within ulaA at 539.826 kb on + strand, within ulaA at 539.827 kb on - strand, within ulaA at 539.827 kb on - strand, within ulaA at 539.853 kb on + strand, within ulaA at 539.881 kb on + strand, within ulaA at 539.881 kb on + strand, within ulaA at 539.881 kb on + strand, within ulaA at 539.881 kb on + strand, within ulaA at 539.882 kb on - strand, within ulaA at 540.006 kb on + strand, within ulaA at 540.006 kb on + strand, within ulaA at 540.029 kb on + strand, within ulaA at 540.055 kb on + strand, within ulaA at 540.055 kb on + strand, within ulaA at 540.056 kb on - strand, within ulaA at 540.056 kb on - strand, within ulaA at 540.056 kb on - strand, within ulaA at 540.056 kb on - strand, within ulaA at 540.056 kb on - strand, within ulaA at 540.056 kb on - strand, within ulaA at 540.056 kb on - strand, within ulaA at 540.056 kb on - strand, within ulaA at 540.057 kb on + strand, within ulaA at 540.058 kb on - strand, within ulaA at 540.058 kb on - strand, within ulaA at 540.058 kb on - strand, within ulaA at 540.099 kb on + strand, within ulaA at 540.099 kb on + strand, within ulaA at 540.099 kb on + strand, within ulaA at 540.099 kb on + strand, within ulaA at 540.099 kb on + strand, within ulaA at 540.099 kb on + strand, within ulaA at 540.100 kb on - strand, within ulaA at 540.100 kb on - strand, within ulaA at 540.100 kb on - strand, within ulaA at 540.100 kb on - strand, within ulaA at 540.100 kb on - strand, within ulaA at 540.100 kb on - strand, within ulaA at 540.213 kb on - strand, within ulaA at 540.235 kb on + strand at 540.260 kb on + strand at 540.260 kb on + strand at 540.268 kb on - strand at 540.330 kb on - strand at 540.346 kb on - strand at 540.346 kb on - strand at 540.346 kb on - strand at 540.381 kb on - strand at 540.731 kb on - strand at 541.001 kb on - strand, within ulaG at 541.128 kb on + strand, within ulaG at 541.129 kb on - strand, within ulaG at 541.218 kb on + strand, within ulaG at 541.218 kb on + strand, within ulaG at 541.221 kb on + strand, within ulaG at 541.222 kb on - strand, within ulaG at 541.346 kb on + strand, within ulaG at 541.347 kb on - strand, within ulaG at 541.347 kb on - strand, within ulaG at 541.376 kb on + strand, within ulaG at 541.376 kb on + strand, within ulaG at 541.377 kb on - strand, within ulaG at 541.397 kb on + strand, within ulaG at 541.397 kb on + strand, within ulaG at 541.398 kb on - strand, within ulaG at 541.402 kb on + strand, within ulaG at 541.403 kb on - strand, within ulaG at 541.403 kb on - strand, within ulaG at 541.403 kb on - strand, within ulaG at 541.406 kb on + strand, within ulaG at 541.406 kb on + strand, within ulaG at 541.407 kb on - strand, within ulaG at 541.409 kb on + strand, within ulaG at 541.410 kb on - strand, within ulaG at 541.505 kb on - strand, within ulaG at 541.514 kb on - strand, within ulaG at 541.635 kb on - strand, within ulaG at 541.635 kb on - strand, within ulaG at 541.635 kb on - strand, within ulaG at 541.635 kb on - strand, within ulaG at 541.652 kb on - strand, within ulaG at 541.676 kb on - strand at 541.706 kb on + strand at 541.706 kb on + strand at 541.776 kb on - strand at 541.787 kb on + strand at 541.790 kb on - strand at 541.796 kb on + strand at 541.825 kb on + strand at 541.826 kb on - strand at 541.828 kb on + strand at 541.828 kb on + strand at 541.829 kb on - strand at 541.829 kb on - strand at 542.007 kb on + strand, within ulaR at 542.007 kb on + strand, within ulaR at 542.059 kb on - strand, within ulaR at 542.059 kb on - strand, within ulaR at 542.127 kb on - strand, within ulaR at 542.130 kb on + strand, within ulaR at 542.157 kb on + strand, within ulaR at 542.247 kb on + strand, within ulaR at 542.252 kb on - strand, within ulaR at 542.255 kb on + strand, within ulaR at 542.304 kb on + strand, within ulaR at 542.317 kb on + strand, within ulaR at 542.371 kb on + strand, within ulaR at 542.391 kb on + strand, within ulaR at 542.426 kb on - strand, within ulaR at 542.427 kb on + strand, within ulaR at 542.428 kb on - strand, within ulaR at 542.502 kb on + strand, within ulaR at 542.638 kb on + strand at 542.638 kb on + strand at 542.687 kb on + strand at 542.688 kb on - strand at 542.732 kb on + strand, within yjfP at 542.770 kb on - strand, within yjfP
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 539,748 + ulaA MCAODC_02665 0.56 -0.6 539,749 - ulaA MCAODC_02665 0.56 -1.1 539,826 + ulaA MCAODC_02665 0.62 +0.7 539,826 + ulaA MCAODC_02665 0.62 -0.6 539,826 + ulaA MCAODC_02665 0.62 +1.3 539,827 - ulaA MCAODC_02665 0.62 +0.4 539,827 - ulaA MCAODC_02665 0.62 -0.9 539,853 + ulaA MCAODC_02665 0.64 -0.7 539,881 + ulaA MCAODC_02665 0.66 +0.9 539,881 + ulaA MCAODC_02665 0.66 -2.5 539,881 + ulaA MCAODC_02665 0.66 +0.7 539,881 + ulaA MCAODC_02665 0.66 +0.0 539,882 - ulaA MCAODC_02665 0.66 -0.6 540,006 + ulaA MCAODC_02665 0.75 -0.4 540,006 + ulaA MCAODC_02665 0.75 -0.7 540,029 + ulaA MCAODC_02665 0.76 -0.5 540,055 + ulaA MCAODC_02665 0.78 +1.9 540,055 + ulaA MCAODC_02665 0.78 +0.3 540,056 - ulaA MCAODC_02665 0.78 +0.6 540,056 - ulaA MCAODC_02665 0.78 -0.6 540,056 - ulaA MCAODC_02665 0.78 -0.5 540,056 - ulaA MCAODC_02665 0.78 -0.2 540,056 - ulaA MCAODC_02665 0.78 -1.5 540,056 - ulaA MCAODC_02665 0.78 +1.9 540,056 - ulaA MCAODC_02665 0.78 -0.3 540,056 - ulaA MCAODC_02665 0.78 -2.7 540,057 + ulaA MCAODC_02665 0.78 +0.9 540,058 - ulaA MCAODC_02665 0.78 -0.7 540,058 - ulaA MCAODC_02665 0.78 -0.7 540,058 - ulaA MCAODC_02665 0.78 +1.1 540,099 + ulaA MCAODC_02665 0.81 +1.0 540,099 + ulaA MCAODC_02665 0.81 -0.7 540,099 + ulaA MCAODC_02665 0.81 -0.7 540,099 + ulaA MCAODC_02665 0.81 +0.9 540,099 + ulaA MCAODC_02665 0.81 -1.1 540,099 + ulaA MCAODC_02665 0.81 +0.5 540,100 - ulaA MCAODC_02665 0.81 -1.2 540,100 - ulaA MCAODC_02665 0.81 +0.6 540,100 - ulaA MCAODC_02665 0.81 -1.2 540,100 - ulaA MCAODC_02665 0.81 -1.6 540,100 - ulaA MCAODC_02665 0.81 +0.7 540,100 - ulaA MCAODC_02665 0.81 +0.3 540,213 - ulaA MCAODC_02665 0.90 +0.1 540,235 + -0.2 540,260 + +0.5 540,260 + +0.4 540,268 - -0.7 540,330 - -0.5 540,346 - -0.5 540,346 - +0.6 540,346 - -0.9 540,381 - +0.5 540,731 - +0.9 541,001 - ulaG MCAODC_02670 0.27 -0.4 541,128 + ulaG MCAODC_02670 0.39 -1.0 541,129 - ulaG MCAODC_02670 0.39 -0.3 541,218 + ulaG MCAODC_02670 0.47 -0.1 541,218 + ulaG MCAODC_02670 0.47 +0.9 541,221 + ulaG MCAODC_02670 0.48 +2.9 541,222 - ulaG MCAODC_02670 0.48 -0.7 541,346 + ulaG MCAODC_02670 0.59 -0.3 541,347 - ulaG MCAODC_02670 0.60 -2.1 541,347 - ulaG MCAODC_02670 0.60 +0.1 541,376 + ulaG MCAODC_02670 0.62 -2.6 541,376 + ulaG MCAODC_02670 0.62 -0.5 541,377 - ulaG MCAODC_02670 0.62 +0.9 541,397 + ulaG MCAODC_02670 0.64 +0.3 541,397 + ulaG MCAODC_02670 0.64 -0.3 541,398 - ulaG MCAODC_02670 0.64 -0.5 541,402 + ulaG MCAODC_02670 0.65 +0.3 541,403 - ulaG MCAODC_02670 0.65 -1.1 541,403 - ulaG MCAODC_02670 0.65 +0.7 541,403 - ulaG MCAODC_02670 0.65 +0.3 541,406 + ulaG MCAODC_02670 0.65 +0.4 541,406 + ulaG MCAODC_02670 0.65 +0.9 541,407 - ulaG MCAODC_02670 0.65 -0.8 541,409 + ulaG MCAODC_02670 0.65 +0.1 541,410 - ulaG MCAODC_02670 0.65 -0.4 541,505 - ulaG MCAODC_02670 0.74 +0.9 541,514 - ulaG MCAODC_02670 0.75 -0.6 541,635 - ulaG MCAODC_02670 0.87 -0.1 541,635 - ulaG MCAODC_02670 0.87 -0.6 541,635 - ulaG MCAODC_02670 0.87 -0.5 541,635 - ulaG MCAODC_02670 0.87 +0.4 541,652 - ulaG MCAODC_02670 0.88 +1.9 541,676 - -0.1 541,706 + +0.1 541,706 + +1.6 541,776 - +1.9 541,787 + -0.7 541,790 - +0.1 541,796 + -0.5 541,825 + +1.3 541,826 - +0.1 541,828 + -0.8 541,828 + +1.6 541,829 - -0.1 541,829 - -1.5 542,007 + ulaR MCAODC_02675 0.16 +1.2 542,007 + ulaR MCAODC_02675 0.16 -0.7 542,059 - ulaR MCAODC_02675 0.23 +1.9 542,059 - ulaR MCAODC_02675 0.23 -0.1 542,127 - ulaR MCAODC_02675 0.32 +0.9 542,130 + ulaR MCAODC_02675 0.32 +1.3 542,157 + ulaR MCAODC_02675 0.36 -0.1 542,247 + ulaR MCAODC_02675 0.48 -1.5 542,252 - ulaR MCAODC_02675 0.49 -0.9 542,255 + ulaR MCAODC_02675 0.49 -1.7 542,304 + ulaR MCAODC_02675 0.55 -0.4 542,317 + ulaR MCAODC_02675 0.57 -2.4 542,371 + ulaR MCAODC_02675 0.64 +0.3 542,391 + ulaR MCAODC_02675 0.67 -1.9 542,426 - ulaR MCAODC_02675 0.72 -0.1 542,427 + ulaR MCAODC_02675 0.72 -1.9 542,428 - ulaR MCAODC_02675 0.72 -0.1 542,502 + ulaR MCAODC_02675 0.82 -1.3 542,638 + +2.4 542,638 + +0.3 542,687 + -1.0 542,688 - +1.7 542,732 + yjfP MCAODC_02680 0.13 -1.2 542,770 - yjfP MCAODC_02680 0.18 +1.9
Or see this region's nucleotide sequence