Strain Fitness in Escherichia coli ECRC101 around MCAODC_02140
Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Bas09 |
|---|---|---|---|---|---|
| remove | |||||
| 420,955 | + | +0.8 | |||
| 421,116 | + | +1.4 | |||
| 421,145 | + | -0.8 | |||
| 421,307 | - | nanC | MCAODC_02135 | 0.14 | -0.4 |
| 421,384 | + | nanC | MCAODC_02135 | 0.25 | +1.9 |
| 421,454 | - | nanC | MCAODC_02135 | 0.34 | -0.8 |
| 421,532 | + | nanC | MCAODC_02135 | 0.45 | +1.9 |
| 421,545 | + | nanC | MCAODC_02135 | 0.47 | -0.4 |
| 421,546 | - | nanC | MCAODC_02135 | 0.47 | +0.8 |
| 421,546 | - | nanC | MCAODC_02135 | 0.47 | +0.6 |
| 421,639 | + | nanC | MCAODC_02135 | 0.60 | -0.2 |
| 421,639 | + | nanC | MCAODC_02135 | 0.60 | +1.3 |
| 421,640 | - | nanC | MCAODC_02135 | 0.60 | -0.7 |
| 421,640 | - | nanC | MCAODC_02135 | 0.60 | -0.2 |
| 421,683 | - | nanC | MCAODC_02135 | 0.66 | +0.9 |
| 421,688 | - | nanC | MCAODC_02135 | 0.67 | +0.5 |
| 421,691 | - | nanC | MCAODC_02135 | 0.67 | -0.4 |
| 421,693 | + | nanC | MCAODC_02135 | 0.68 | +0.4 |
| 421,727 | + | nanC | MCAODC_02135 | 0.72 | -1.0 |
| 421,728 | - | nanC | MCAODC_02135 | 0.73 | -1.4 |
| 421,819 | + | nanC | MCAODC_02135 | 0.85 | -0.8 |
| 421,830 | + | nanC | MCAODC_02135 | 0.87 | +0.2 |
| 421,841 | + | nanC | MCAODC_02135 | 0.88 | -0.4 |
| 421,895 | + | -2.2 | |||
| 421,949 | + | +3.5 | |||
| 421,976 | - | -0.1 | |||
| 422,008 | + | -0.0 | |||
| 422,023 | + | -0.4 | |||
| 422,067 | + | nanM | MCAODC_02140 | 0.11 | +0.6 |
| 422,067 | + | nanM | MCAODC_02140 | 0.11 | +0.3 |
| 422,068 | - | nanM | MCAODC_02140 | 0.11 | -0.4 |
| 422,068 | - | nanM | MCAODC_02140 | 0.11 | +0.1 |
| 422,068 | - | nanM | MCAODC_02140 | 0.11 | -0.2 |
| 422,068 | - | nanM | MCAODC_02140 | 0.11 | -0.1 |
| 422,077 | + | nanM | MCAODC_02140 | 0.12 | +0.4 |
| 422,100 | + | nanM | MCAODC_02140 | 0.14 | +0.1 |
| 422,100 | + | nanM | MCAODC_02140 | 0.14 | -0.4 |
| 422,101 | - | nanM | MCAODC_02140 | 0.14 | +0.9 |
| 422,144 | - | nanM | MCAODC_02140 | 0.18 | +0.9 |
| 422,189 | + | nanM | MCAODC_02140 | 0.22 | +0.6 |
| 422,190 | - | nanM | MCAODC_02140 | 0.22 | -1.1 |
| 422,190 | - | nanM | MCAODC_02140 | 0.22 | +0.9 |
| 422,190 | - | nanM | MCAODC_02140 | 0.22 | +0.9 |
| 422,205 | + | nanM | MCAODC_02140 | 0.24 | +0.6 |
| 422,206 | - | nanM | MCAODC_02140 | 0.24 | +2.9 |
| 422,263 | + | nanM | MCAODC_02140 | 0.29 | -0.9 |
| 422,271 | + | nanM | MCAODC_02140 | 0.30 | -1.3 |
| 422,272 | - | nanM | MCAODC_02140 | 0.30 | -0.3 |
| 422,272 | - | nanM | MCAODC_02140 | 0.30 | +1.3 |
| 422,365 | - | nanM | MCAODC_02140 | 0.38 | +0.9 |
| 422,365 | - | nanM | MCAODC_02140 | 0.38 | +0.3 |
| 422,466 | + | nanM | MCAODC_02140 | 0.47 | +1.1 |
| 422,615 | + | nanM | MCAODC_02140 | 0.61 | -1.7 |
| 422,826 | + | nanM | MCAODC_02140 | 0.80 | -0.0 |
| 422,864 | + | nanM | MCAODC_02140 | 0.83 | +0.3 |
| 422,933 | - | nanM | MCAODC_02140 | 0.89 | +1.3 |
| 422,948 | + | -0.2 | |||
| 422,957 | - | +0.2 | |||
| 423,125 | + | -0.6 | |||
| 423,145 | + | +0.5 | |||
| 423,146 | - | -0.0 | |||
| 423,172 | - | -0.4 | |||
| 423,336 | + | nanS | MCAODC_02145 | 0.23 | +0.2 |
| 423,337 | - | nanS | MCAODC_02145 | 0.23 | -0.3 |
| 423,346 | + | nanS | MCAODC_02145 | 0.24 | -1.4 |
| 423,346 | + | nanS | MCAODC_02145 | 0.24 | -0.4 |
| 423,346 | + | nanS | MCAODC_02145 | 0.24 | -2.2 |
| 423,408 | + | nanS | MCAODC_02145 | 0.30 | +0.3 |
| 423,409 | - | nanS | MCAODC_02145 | 0.30 | +0.7 |
| 423,409 | - | nanS | MCAODC_02145 | 0.30 | +0.9 |
| 423,442 | - | nanS | MCAODC_02145 | 0.33 | -0.7 |
| 423,442 | - | nanS | MCAODC_02145 | 0.33 | -0.3 |
| 423,511 | + | nanS | MCAODC_02145 | 0.40 | +0.1 |
| 423,511 | + | nanS | MCAODC_02145 | 0.40 | +0.6 |
| 423,511 | + | nanS | MCAODC_02145 | 0.40 | -0.9 |
| 423,512 | - | nanS | MCAODC_02145 | 0.40 | +1.9 |
| 423,512 | - | nanS | MCAODC_02145 | 0.40 | +0.3 |
| 423,571 | + | nanS | MCAODC_02145 | 0.46 | +0.7 |
| 423,581 | + | nanS | MCAODC_02145 | 0.48 | -0.8 |
| 423,638 | + | nanS | MCAODC_02145 | 0.53 | -1.4 |
| 423,639 | - | nanS | MCAODC_02145 | 0.53 | +0.9 |
| 423,665 | + | nanS | MCAODC_02145 | 0.56 | -1.1 |
| 423,666 | - | nanS | MCAODC_02145 | 0.56 | -1.0 |
| 423,666 | - | nanS | MCAODC_02145 | 0.56 | -0.4 |
| 423,666 | - | nanS | MCAODC_02145 | 0.56 | +1.9 |
| 423,680 | - | nanS | MCAODC_02145 | 0.58 | +0.6 |
| 423,702 | + | nanS | MCAODC_02145 | 0.60 | -0.8 |
| 423,703 | - | nanS | MCAODC_02145 | 0.60 | +0.2 |
| 423,703 | - | nanS | MCAODC_02145 | 0.60 | +0.2 |
| 423,709 | - | nanS | MCAODC_02145 | 0.61 | -0.1 |
| 423,734 | + | nanS | MCAODC_02145 | 0.63 | -0.3 |
| 423,742 | + | nanS | MCAODC_02145 | 0.64 | +1.6 |
| 423,742 | + | nanS | MCAODC_02145 | 0.64 | -0.6 |
| 423,743 | - | nanS | MCAODC_02145 | 0.64 | -0.6 |
| 423,757 | - | nanS | MCAODC_02145 | 0.65 | +1.1 |
| 423,757 | - | nanS | MCAODC_02145 | 0.65 | -0.1 |
| 423,760 | - | nanS | MCAODC_02145 | 0.66 | +0.3 |
| 423,765 | + | nanS | MCAODC_02145 | 0.66 | +0.3 |
| 423,766 | - | nanS | MCAODC_02145 | 0.66 | +0.4 |
| 423,803 | - | nanS | MCAODC_02145 | 0.70 | +1.3 |
| 423,829 | + | nanS | MCAODC_02145 | 0.73 | +0.6 |
| 423,837 | + | nanS | MCAODC_02145 | 0.74 | -0.6 |
| 423,858 | + | nanS | MCAODC_02145 | 0.76 | +0.1 |
| 423,870 | + | nanS | MCAODC_02145 | 0.77 | +0.7 |
| 423,870 | + | nanS | MCAODC_02145 | 0.77 | -0.3 |
| 423,870 | + | nanS | MCAODC_02145 | 0.77 | +0.1 |
| 423,948 | - | nanS | MCAODC_02145 | 0.85 | -0.2 |
| 423,948 | - | nanS | MCAODC_02145 | 0.85 | -0.2 |
| 423,962 | - | nanS | MCAODC_02145 | 0.86 | -0.6 |
| 423,962 | - | nanS | MCAODC_02145 | 0.86 | -0.3 |
Or see this region's nucleotide sequence