Experiment: Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_01185 and rsmH overlap by 4 nucleotides rsmH and mraZ are separated by 1 nucleotides mraZ and cra are separated by 601 nucleotides
MCAODC_01185: MCAODC_01185 - penicillin-binding protein PBP3 FtsI, at 221,208 to 221,573
_01185
MCAODC_01190: rsmH - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 221,570 to 222,511
rsmH
MCAODC_01195: mraZ - division/cell wall cluster transcriptional repressor MraZ, at 222,513 to 222,971
mraZ
MCAODC_01200: cra - catabolite repressor/activator, at 223,573 to 224,577
cra
Position (kb) 222
223 Strain fitness (log2 ratio) -2
-1
0
1
2 at 221.594 kb on - strand at 221.609 kb on - strand at 221.856 kb on - strand, within rsmH at 222.049 kb on - strand, within rsmH at 222.739 kb on - strand, within mraZ at 222.739 kb on - strand, within mraZ at 222.745 kb on - strand, within mraZ at 222.830 kb on - strand, within mraZ at 222.952 kb on - strand at 223.098 kb on + strand at 223.099 kb on - strand at 223.101 kb on + strand at 223.102 kb on - strand at 223.102 kb on - strand at 223.102 kb on - strand at 223.143 kb on - strand at 223.154 kb on + strand at 223.154 kb on + strand at 223.155 kb on - strand at 223.161 kb on - strand at 223.161 kb on - strand at 223.221 kb on + strand at 223.222 kb on - strand at 223.222 kb on - strand at 223.223 kb on + strand at 223.256 kb on - strand at 223.262 kb on + strand at 223.262 kb on + strand at 223.262 kb on + strand at 223.262 kb on + strand at 223.262 kb on + strand at 223.262 kb on + strand at 223.262 kb on + strand at 223.262 kb on + strand at 223.262 kb on + strand at 223.262 kb on + strand at 223.263 kb on - strand at 223.263 kb on - strand at 223.263 kb on - strand at 223.263 kb on - strand at 223.263 kb on - strand at 223.263 kb on - strand at 223.263 kb on - strand at 223.409 kb on + strand at 223.409 kb on + strand at 223.410 kb on - strand at 223.413 kb on + strand at 223.414 kb on - strand at 223.414 kb on - strand at 223.437 kb on + strand at 223.441 kb on + strand at 223.442 kb on - strand at 223.442 kb on - strand at 223.454 kb on + strand at 223.464 kb on + strand at 223.471 kb on - strand at 223.471 kb on - strand at 223.527 kb on + strand at 223.574 kb on + strand at 223.574 kb on + strand at 223.574 kb on + strand at 223.575 kb on - strand at 223.575 kb on - strand at 223.578 kb on + strand at 223.579 kb on - strand at 223.579 kb on - strand at 223.609 kb on - strand at 223.614 kb on + strand at 223.615 kb on - strand at 223.732 kb on + strand, within cra at 223.732 kb on + strand, within cra at 223.733 kb on - strand, within cra at 223.792 kb on - strand, within cra at 223.792 kb on - strand, within cra at 223.792 kb on - strand, within cra at 223.804 kb on + strand, within cra at 223.805 kb on - strand, within cra at 223.919 kb on + strand, within cra at 223.920 kb on - strand, within cra
Per-strain Table
Position Strand Gene LocusTag Fraction Bas09 remove 221,594 - -1.5 221,609 - +0.4 221,856 - rsmH MCAODC_01190 0.30 +1.2 222,049 - rsmH MCAODC_01190 0.51 +1.8 222,739 - mraZ MCAODC_01195 0.49 -0.2 222,739 - mraZ MCAODC_01195 0.49 -1.3 222,745 - mraZ MCAODC_01195 0.51 +0.8 222,830 - mraZ MCAODC_01195 0.69 +0.0 222,952 - +1.4 223,098 + -0.2 223,099 - +0.7 223,101 + +0.2 223,102 - +1.0 223,102 - +1.0 223,102 - +1.8 223,143 - +0.1 223,154 + +1.0 223,154 + -1.2 223,155 - +1.8 223,161 - +0.2 223,161 - -0.7 223,221 + +0.9 223,222 - +0.7 223,222 - +1.2 223,223 + -0.2 223,256 - +1.6 223,262 + +0.9 223,262 + +0.3 223,262 + -0.2 223,262 + +0.2 223,262 + -2.0 223,262 + -1.2 223,262 + +0.4 223,262 + -0.0 223,262 + -1.1 223,262 + -0.0 223,263 - +0.9 223,263 - -0.1 223,263 - -0.9 223,263 - -0.7 223,263 - +0.7 223,263 - -0.6 223,263 - -0.2 223,409 + -0.4 223,409 + +0.6 223,410 - +1.2 223,413 + -1.1 223,414 - -1.4 223,414 - -1.0 223,437 + +0.8 223,441 + -0.5 223,442 - +0.7 223,442 - +0.0 223,454 + +0.3 223,464 + +1.5 223,471 - +0.3 223,471 - -0.5 223,527 + -1.5 223,574 + +1.4 223,574 + +1.1 223,574 + +0.5 223,575 - -0.4 223,575 - -1.1 223,578 + -0.5 223,579 - +0.8 223,579 - -0.6 223,609 - -1.5 223,614 + -0.8 223,615 - +1.8 223,732 + cra MCAODC_01200 0.16 -1.0 223,732 + cra MCAODC_01200 0.16 -0.2 223,733 - cra MCAODC_01200 0.16 -2.1 223,792 - cra MCAODC_01200 0.22 +0.2 223,792 - cra MCAODC_01200 0.22 +0.2 223,792 - cra MCAODC_01200 0.22 -1.8 223,804 + cra MCAODC_01200 0.23 -1.6 223,805 - cra MCAODC_01200 0.23 -0.5 223,919 + cra MCAODC_01200 0.34 -0.5 223,920 - cra MCAODC_01200 0.35 -1.8
Or see this region's nucleotide sequence