Strain Fitness in Escherichia coli ECRC101 around MCAODC_00700

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrseP and cdsA are separated by 11 nucleotidescdsA and uppS overlap by 32 nucleotidesuppS and ispU overlap by 1 nucleotidesispU and ispC are separated by 188 nucleotides MCAODC_00690: rseP - sigma E protease regulator RseP, at 115,968 to 117,320 rseP MCAODC_00695: cdsA - phosphatidate cytidylyltransferase, at 117,332 to 118,081 cdsA MCAODC_00700: uppS - polyprenyl diphosphate synthase, at 118,050 to 118,202 uppS MCAODC_00705: ispU - (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase, at 118,202 to 118,960 ispU MCAODC_00710: ispC - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 119,149 to 120,345 ispC Position (kb) 118 119Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 117.321 kb on - strandat 119.017 kb on - strandat 119.047 kb on - strandat 119.047 kb on - strandat 119.057 kb on - strandat 119.059 kb on - strandat 119.069 kb on - strandat 119.069 kb on - strandat 119.073 kb on - strandat 119.093 kb on - strandat 119.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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117,321 - -1.6
119,017 - -1.9
119,047 - -0.5
119,047 - -2.7
119,057 - -2.7
119,059 - -2.5
119,069 - -1.7
119,069 - -2.0
119,073 - -0.8
119,093 - -0.8
119,093 - -3.8

Or see this region's nucleotide sequence