Strain Fitness in Escherichia coli ECRC101 around MCAODC_00685

Experiment: Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlpxD and skp are separated by 3 nucleotidesskp and bamA are separated by 120 nucleotidesbamA and rseP are separated by 29 nucleotides MCAODC_00675: lpxD - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 111,871 to 112,896 lpxD MCAODC_00680: skp - molecular chaperone Skp, at 112,900 to 113,385 skp MCAODC_00685: bamA - outer membrane protein assembly factor BamA, at 113,506 to 115,938 bamA MCAODC_00690: rseP - sigma E protease regulator RseP, at 115,968 to 117,320 rseP Position (kb) 113 114 115 116Strain fitness (log2 ratio) -1 0 1at 113.257 kb on - strand, within skpat 113.279 kb on - strand, within skpat 113.369 kb on - strandat 113.369 kb on - strandat 113.372 kb on - strandat 113.372 kb on - strandat 113.449 kb on - strandat 113.449 kb on - strandat 113.449 kb on - strandat 113.449 kb on - strandat 113.451 kb on - strandat 113.479 kb on - strandat 113.485 kb on - strandat 113.485 kb on - strandat 113.485 kb on - strandat 113.507 kb on + strandat 113.508 kb on - strandat 113.508 kb on - strandat 113.508 kb on - strandat 113.508 kb on - strandat 115.959 kb on - strandat 115.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas09
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113,257 - skp MCAODC_00680 0.73 -0.6
113,279 - skp MCAODC_00680 0.78 -0.4
113,369 - -1.5
113,369 - -0.4
113,372 - +1.0
113,372 - +0.3
113,449 - +0.8
113,449 - +0.5
113,449 - +0.6
113,449 - +0.4
113,451 - +0.0
113,479 - -0.4
113,485 - +0.6
113,485 - +0.1
113,485 - +1.5
113,507 + +1.5
113,508 - +0.9
113,508 - -0.8
113,508 - +0.8
113,508 - +0.0
115,959 - -0.5
115,963 - +0.1

Or see this region's nucleotide sequence