Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF900 and GFF901 are separated by 27 nucleotides GFF901 and GFF902 are separated by 29 nucleotides GFF902 and GFF903 are separated by 20 nucleotides
GFF900 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 628,833 to 630,974
GFF900
GFF901 - contains maoC-like domain, at 631,002 to 631,454
GFF901
GFF902 - Butyryl-CoA dehydrogenase (EC 1.3.8.1), at 631,484 to 632,656
GFF902
GFF903 - Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, at 632,677 to 634,365
GFF903
Position (kb) 631
632
633 Strain fitness (log2 ratio) -2
-1
0
1 at 630.526 kb on + strand, within GFF900 at 630.783 kb on + strand at 630.972 kb on + strand at 630.973 kb on - strand at 630.993 kb on - strand at 631.143 kb on + strand, within GFF901 at 631.144 kb on - strand, within GFF901 at 631.144 kb on - strand, within GFF901 at 631.466 kb on + strand at 631.467 kb on - strand at 631.628 kb on + strand, within GFF902 at 631.629 kb on - strand, within GFF902 at 631.736 kb on + strand, within GFF902 at 631.736 kb on + strand, within GFF902 at 631.736 kb on + strand, within GFF902 at 631.737 kb on - strand, within GFF902 at 631.737 kb on - strand, within GFF902 at 631.737 kb on - strand, within GFF902 at 631.737 kb on - strand, within GFF902 at 631.742 kb on + strand, within GFF902 at 631.970 kb on + strand, within GFF902 at 631.970 kb on + strand, within GFF902 at 632.204 kb on - strand, within GFF902 at 632.359 kb on - strand, within GFF902 at 632.414 kb on + strand, within GFF902 at 632.414 kb on + strand, within GFF902 at 632.414 kb on + strand, within GFF902 at 632.415 kb on - strand, within GFF902 at 632.544 kb on - strand at 632.544 kb on - strand at 632.544 kb on - strand at 632.897 kb on - strand, within GFF903 at 633.005 kb on - strand, within GFF903 at 633.005 kb on - strand, within GFF903 at 633.031 kb on + strand, within GFF903 at 633.032 kb on - strand, within GFF903
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 630,526 + GFF900 0.79 +0.2 630,783 + -0.3 630,972 + -0.2 630,973 - +0.2 630,993 - +0.4 631,143 + GFF901 0.31 -0.7 631,144 - GFF901 0.31 +0.2 631,144 - GFF901 0.31 -1.2 631,466 + -0.7 631,467 - +0.1 631,628 + GFF902 0.12 -0.1 631,629 - GFF902 0.12 -0.1 631,736 + GFF902 0.21 -0.3 631,736 + GFF902 0.21 -0.3 631,736 + GFF902 0.21 +0.4 631,737 - GFF902 0.22 -0.9 631,737 - GFF902 0.22 -0.1 631,737 - GFF902 0.22 +0.1 631,737 - GFF902 0.22 -0.2 631,742 + GFF902 0.22 +0.0 631,970 + GFF902 0.41 +0.0 631,970 + GFF902 0.41 +0.3 632,204 - GFF902 0.61 -1.7 632,359 - GFF902 0.75 +0.4 632,414 + GFF902 0.79 -0.2 632,414 + GFF902 0.79 +0.7 632,414 + GFF902 0.79 -2.0 632,415 - GFF902 0.79 -0.4 632,544 - +0.3 632,544 - -0.4 632,544 - +0.2 632,897 - GFF903 0.13 +0.2 633,005 - GFF903 0.19 +0.3 633,005 - GFF903 0.19 -0.3 633,031 + GFF903 0.21 -0.1 633,032 - GFF903 0.21 -0.1
Or see this region's nucleotide sequence