Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF775 and GFF776 are separated by 47 nucleotides GFF776 and GFF777 are separated by 199 nucleotides
GFF775 - Cell division protein FtsK, at 468,008 to 470,365
GFF775
GFF776 - Outer membrane lipoprotein carrier protein LolA, at 470,413 to 471,051
GFF776
GFF777 - FIG065221: Holliday junction DNA helicase, at 471,251 to 472,354
GFF777
Position (kb) 470
471
472 Strain fitness (log2 ratio) -2
-1
0
1 at 469.964 kb on + strand, within GFF775 at 469.965 kb on - strand, within GFF775 at 470.229 kb on - strand at 470.229 kb on - strand at 471.230 kb on - strand at 471.527 kb on + strand, within GFF777 at 471.528 kb on - strand, within GFF777 at 471.528 kb on - strand, within GFF777 at 471.792 kb on - strand, within GFF777 at 471.792 kb on - strand, within GFF777 at 471.792 kb on - strand, within GFF777 at 471.851 kb on + strand, within GFF777 at 471.851 kb on + strand, within GFF777 at 471.851 kb on + strand, within GFF777 at 471.852 kb on - strand, within GFF777 at 471.852 kb on - strand, within GFF777 at 471.893 kb on + strand, within GFF777 at 471.893 kb on + strand, within GFF777 at 471.894 kb on - strand, within GFF777 at 471.986 kb on + strand, within GFF777 at 471.986 kb on + strand, within GFF777 at 471.986 kb on + strand, within GFF777 at 471.987 kb on - strand, within GFF777 at 471.987 kb on - strand, within GFF777 at 471.987 kb on - strand, within GFF777 at 472.040 kb on + strand, within GFF777 at 472.040 kb on + strand, within GFF777 at 472.041 kb on - strand, within GFF777 at 472.041 kb on - strand, within GFF777 at 472.041 kb on - strand, within GFF777
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 469,964 + GFF775 0.83 +0.1 469,965 - GFF775 0.83 -2.0 470,229 - -0.7 470,229 - +0.8 471,230 - -1.0 471,527 + GFF777 0.25 +0.3 471,528 - GFF777 0.25 +0.9 471,528 - GFF777 0.25 -0.0 471,792 - GFF777 0.49 -0.1 471,792 - GFF777 0.49 -0.2 471,792 - GFF777 0.49 -0.4 471,851 + GFF777 0.54 +0.3 471,851 + GFF777 0.54 +0.9 471,851 + GFF777 0.54 -1.2 471,852 - GFF777 0.54 -0.4 471,852 - GFF777 0.54 +0.0 471,893 + GFF777 0.58 -0.3 471,893 + GFF777 0.58 +1.4 471,894 - GFF777 0.58 -0.1 471,986 + GFF777 0.67 -2.5 471,986 + GFF777 0.67 -0.2 471,986 + GFF777 0.67 -0.3 471,987 - GFF777 0.67 +0.5 471,987 - GFF777 0.67 -0.4 471,987 - GFF777 0.67 +0.1 472,040 + GFF777 0.71 +0.3 472,040 + GFF777 0.71 -0.4 472,041 - GFF777 0.72 -0.3 472,041 - GFF777 0.72 -0.6 472,041 - GFF777 0.72 -0.5
Or see this region's nucleotide sequence