Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF747 and GFF748 are separated by 25 nucleotides GFF748 and GFF749 are separated by 24 nucleotides GFF749 and GFF750 are separated by 530 nucleotides
GFF747 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 432,783 to 434,597
GFF747
GFF748 - Tricarboxylate transport protein TctB, at 434,623 to 435,129
GFF748
GFF749 - Tricarboxylate transport membrane protein TctA, at 435,154 to 436,716
GFF749
GFF750 - hypothetical protein, at 437,247 to 438,044
GFF750
Position (kb) 435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 434.190 kb on + strand, within GFF747 at 434.343 kb on + strand, within GFF747 at 434.352 kb on + strand, within GFF747 at 434.413 kb on - strand, within GFF747 at 434.740 kb on + strand, within GFF748 at 435.362 kb on - strand, within GFF749 at 435.362 kb on - strand, within GFF749 at 435.362 kb on - strand, within GFF749 at 435.365 kb on - strand, within GFF749 at 435.376 kb on + strand, within GFF749 at 435.377 kb on - strand, within GFF749 at 435.907 kb on - strand, within GFF749 at 436.162 kb on + strand, within GFF749 at 436.163 kb on - strand, within GFF749 at 436.163 kb on - strand, within GFF749 at 436.163 kb on - strand, within GFF749 at 436.806 kb on + strand at 436.807 kb on - strand at 436.807 kb on - strand at 436.957 kb on + strand at 436.957 kb on + strand at 436.958 kb on - strand at 436.958 kb on - strand at 436.958 kb on - strand at 436.983 kb on - strand at 437.075 kb on + strand at 437.076 kb on - strand at 437.076 kb on - strand at 437.076 kb on - strand at 437.078 kb on - strand at 437.102 kb on + strand at 437.111 kb on + strand at 437.112 kb on - strand at 437.126 kb on - strand at 437.126 kb on - strand at 437.171 kb on + strand at 437.171 kb on + strand at 437.219 kb on + strand at 437.220 kb on - strand at 437.279 kb on + strand at 437.279 kb on + strand at 437.279 kb on + strand at 437.280 kb on - strand at 437.325 kb on - strand at 437.343 kb on + strand, within GFF750 at 437.344 kb on - strand, within GFF750 at 437.429 kb on + strand, within GFF750 at 437.429 kb on + strand, within GFF750 at 437.430 kb on - strand, within GFF750 at 437.472 kb on + strand, within GFF750 at 437.472 kb on + strand, within GFF750 at 437.598 kb on + strand, within GFF750 at 437.598 kb on + strand, within GFF750 at 437.599 kb on - strand, within GFF750 at 437.599 kb on - strand, within GFF750
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 434,190 + GFF747 0.78 -0.5 434,343 + GFF747 0.86 -2.8 434,352 + GFF747 0.86 +0.8 434,413 - GFF747 0.90 +1.1 434,740 + GFF748 0.23 -0.4 435,362 - GFF749 0.13 +0.4 435,362 - GFF749 0.13 -0.2 435,362 - GFF749 0.13 +0.1 435,365 - GFF749 0.13 +0.1 435,376 + GFF749 0.14 +0.6 435,377 - GFF749 0.14 +0.3 435,907 - GFF749 0.48 -0.1 436,162 + GFF749 0.64 +0.6 436,163 - GFF749 0.65 -0.2 436,163 - GFF749 0.65 +0.1 436,163 - GFF749 0.65 +0.5 436,806 + +0.3 436,807 - -0.0 436,807 - +0.1 436,957 + +1.9 436,957 + -0.2 436,958 - -0.7 436,958 - -0.3 436,958 - +0.4 436,983 - +0.0 437,075 + +0.1 437,076 - +0.3 437,076 - +0.1 437,076 - -0.7 437,078 - -0.4 437,102 + +0.3 437,111 + +0.7 437,112 - -0.0 437,126 - -0.7 437,126 - -0.3 437,171 + -1.1 437,171 + +0.6 437,219 + -0.2 437,220 - -0.2 437,279 + +0.0 437,279 + +0.8 437,279 + -0.2 437,280 - -0.5 437,325 - -0.1 437,343 + GFF750 0.12 -0.4 437,344 - GFF750 0.12 -0.9 437,429 + GFF750 0.23 +1.0 437,429 + GFF750 0.23 -0.5 437,430 - GFF750 0.23 -1.6 437,472 + GFF750 0.28 +0.4 437,472 + GFF750 0.28 -0.4 437,598 + GFF750 0.44 -0.7 437,598 + GFF750 0.44 -0.2 437,599 - GFF750 0.44 +0.3 437,599 - GFF750 0.44 +0.6
Or see this region's nucleotide sequence