Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF744 and GFF745 overlap by 4 nucleotides GFF745 and GFF746 are separated by 394 nucleotides GFF746 and GFF747 are separated by 7 nucleotides
GFF744 - Putative deoxyribonuclease YjjV, at 430,271 to 431,104
GFF744
GFF745 - G:T/U mismatch-specific uracil/thymine DNA-glycosylase, at 431,101 to 431,598
GFF745
GFF746 - Spermidine synthase (EC 2.5.1.16), at 431,993 to 432,775
GFF746
GFF747 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 432,783 to 434,597
GFF747
Position (kb) 431
432
433 Strain fitness (log2 ratio) -2
-1
0
1 at 431.200 kb on + strand, within GFF745 at 431.200 kb on + strand, within GFF745 at 431.201 kb on - strand, within GFF745 at 431.203 kb on + strand, within GFF745 at 431.204 kb on - strand, within GFF745 at 431.204 kb on - strand, within GFF745 at 431.275 kb on + strand, within GFF745 at 431.275 kb on + strand, within GFF745 at 431.276 kb on - strand, within GFF745 at 431.276 kb on - strand, within GFF745 at 431.331 kb on - strand, within GFF745 at 431.712 kb on + strand at 431.757 kb on - strand at 431.798 kb on + strand at 431.798 kb on + strand at 431.899 kb on + strand at 431.908 kb on + strand at 431.909 kb on - strand at 432.155 kb on + strand, within GFF746 at 432.155 kb on + strand, within GFF746 at 432.156 kb on - strand, within GFF746 at 432.156 kb on - strand, within GFF746 at 432.446 kb on + strand, within GFF746 at 432.564 kb on - strand, within GFF746 at 432.769 kb on - strand at 433.047 kb on + strand, within GFF747 at 433.047 kb on + strand, within GFF747 at 433.047 kb on + strand, within GFF747 at 433.048 kb on - strand, within GFF747 at 433.110 kb on + strand, within GFF747 at 433.437 kb on + strand, within GFF747 at 433.438 kb on - strand, within GFF747 at 433.438 kb on - strand, within GFF747 at 433.534 kb on - strand, within GFF747
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 431,200 + GFF745 0.20 +0.1 431,200 + GFF745 0.20 +0.4 431,201 - GFF745 0.20 +0.1 431,203 + GFF745 0.20 +0.7 431,204 - GFF745 0.21 +0.9 431,204 - GFF745 0.21 -1.0 431,275 + GFF745 0.35 -0.7 431,275 + GFF745 0.35 +0.4 431,276 - GFF745 0.35 -0.1 431,276 - GFF745 0.35 +0.9 431,331 - GFF745 0.46 +0.2 431,712 + +0.1 431,757 - -1.4 431,798 + -1.1 431,798 + -0.3 431,899 + +0.6 431,908 + +0.0 431,909 - -0.1 432,155 + GFF746 0.21 +0.0 432,155 + GFF746 0.21 +0.3 432,156 - GFF746 0.21 +0.2 432,156 - GFF746 0.21 +0.1 432,446 + GFF746 0.58 +1.6 432,564 - GFF746 0.73 +0.1 432,769 - +0.1 433,047 + GFF747 0.15 +0.2 433,047 + GFF747 0.15 -1.9 433,047 + GFF747 0.15 +0.7 433,048 - GFF747 0.15 -0.2 433,110 + GFF747 0.18 +0.6 433,437 + GFF747 0.36 -0.2 433,438 - GFF747 0.36 -0.2 433,438 - GFF747 0.36 +0.2 433,534 - GFF747 0.41 +0.1
Or see this region's nucleotide sequence