Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF706

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF705 and GFF706 are separated by 66 nucleotidesGFF706 and GFF707 are separated by 29 nucleotides GFF705 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 384,456 to 385,490 GFF705 GFF706 - Tricarboxylate transport protein TctC, at 385,557 to 386,537 GFF706 GFF707 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like, at 386,567 to 387,601 GFF707 Position (kb) 385 386 387Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 384.663 kb on + strand, within GFF705at 384.663 kb on + strand, within GFF705at 384.664 kb on - strand, within GFF705at 384.664 kb on - strand, within GFF705at 384.664 kb on - strand, within GFF705at 384.664 kb on - strand, within GFF705at 384.792 kb on + strand, within GFF705at 384.918 kb on + strand, within GFF705at 385.173 kb on + strand, within GFF705at 385.173 kb on + strand, within GFF705at 385.173 kb on + strand, within GFF705at 385.173 kb on + strand, within GFF705at 385.174 kb on - strand, within GFF705at 385.174 kb on - strand, within GFF705at 385.417 kb on - strandat 385.417 kb on - strandat 385.488 kb on + strandat 385.488 kb on + strandat 385.488 kb on + strandat 385.489 kb on - strandat 385.489 kb on - strandat 385.489 kb on - strandat 385.489 kb on - strandat 385.489 kb on - strandat 385.597 kb on + strandat 385.598 kb on - strandat 385.598 kb on - strandat 385.975 kb on + strand, within GFF706at 385.975 kb on + strand, within GFF706at 385.975 kb on + strand, within GFF706at 385.975 kb on + strand, within GFF706at 385.975 kb on + strand, within GFF706at 385.976 kb on - strand, within GFF706at 385.976 kb on - strand, within GFF706at 386.062 kb on + strand, within GFF706at 386.062 kb on + strand, within GFF706at 386.063 kb on - strand, within GFF706at 386.063 kb on - strand, within GFF706at 386.063 kb on - strand, within GFF706at 386.063 kb on - strand, within GFF706at 386.063 kb on - strand, within GFF706at 386.063 kb on - strand, within GFF706at 386.063 kb on - strand, within GFF706at 386.213 kb on - strand, within GFF706at 386.643 kb on + strandat 386.644 kb on - strandat 386.688 kb on + strand, within GFF707at 386.688 kb on + strand, within GFF707at 386.688 kb on + strand, within GFF707at 386.688 kb on + strand, within GFF707at 386.688 kb on + strand, within GFF707at 386.689 kb on - strand, within GFF707at 386.689 kb on - strand, within GFF707at 386.689 kb on - strand, within GFF707at 386.689 kb on - strand, within GFF707at 386.689 kb on - strand, within GFF707at 386.799 kb on + strand, within GFF707at 386.800 kb on - strand, within GFF707at 386.800 kb on - strand, within GFF707at 386.850 kb on + strand, within GFF707at 386.850 kb on + strand, within GFF707at 386.850 kb on + strand, within GFF707at 386.851 kb on - strand, within GFF707at 386.880 kb on + strand, within GFF707at 387.012 kb on + strand, within GFF707at 387.012 kb on + strand, within GFF707at 387.153 kb on + strand, within GFF707at 387.153 kb on + strand, within GFF707at 387.153 kb on + strand, within GFF707at 387.153 kb on + strand, within GFF707at 387.154 kb on - strand, within GFF707at 387.154 kb on - strand, within GFF707at 387.192 kb on + strand, within GFF707at 387.192 kb on + strand, within GFF707at 387.208 kb on - strand, within GFF707at 387.384 kb on + strand, within GFF707at 387.384 kb on + strand, within GFF707at 387.384 kb on + strand, within GFF707at 387.384 kb on + strand, within GFF707at 387.385 kb on - strand, within GFF707at 387.385 kb on - strand, within GFF707at 387.498 kb on + strandat 387.498 kb on + strandat 387.499 kb on - strandat 387.499 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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384,663 + GFF705 0.20 +0.8
384,663 + GFF705 0.20 -1.3
384,664 - GFF705 0.20 -0.3
384,664 - GFF705 0.20 +0.0
384,664 - GFF705 0.20 +0.5
384,664 - GFF705 0.20 +0.1
384,792 + GFF705 0.32 -0.9
384,918 + GFF705 0.45 -0.2
385,173 + GFF705 0.69 +0.5
385,173 + GFF705 0.69 +0.4
385,173 + GFF705 0.69 +0.4
385,173 + GFF705 0.69 -0.5
385,174 - GFF705 0.69 +0.2
385,174 - GFF705 0.69 -0.2
385,417 - +1.2
385,417 - +0.5
385,488 + +0.2
385,488 + -0.8
385,488 + -0.2
385,489 - +0.2
385,489 - -0.1
385,489 - +1.1
385,489 - +0.2
385,489 - +0.3
385,597 + +0.0
385,598 - -3.0
385,598 - +2.7
385,975 + GFF706 0.43 +0.1
385,975 + GFF706 0.43 -0.5
385,975 + GFF706 0.43 +1.7
385,975 + GFF706 0.43 +0.1
385,975 + GFF706 0.43 +0.5
385,976 - GFF706 0.43 +0.4
385,976 - GFF706 0.43 -0.2
386,062 + GFF706 0.51 -0.7
386,062 + GFF706 0.51 -1.1
386,063 - GFF706 0.52 -0.4
386,063 - GFF706 0.52 +0.7
386,063 - GFF706 0.52 -0.2
386,063 - GFF706 0.52 +0.4
386,063 - GFF706 0.52 +0.1
386,063 - GFF706 0.52 +0.5
386,063 - GFF706 0.52 -0.0
386,213 - GFF706 0.67 -0.1
386,643 + -0.9
386,644 - +0.1
386,688 + GFF707 0.12 -1.1
386,688 + GFF707 0.12 +0.9
386,688 + GFF707 0.12 -0.5
386,688 + GFF707 0.12 +0.3
386,688 + GFF707 0.12 +0.3
386,689 - GFF707 0.12 -0.1
386,689 - GFF707 0.12 +0.7
386,689 - GFF707 0.12 -0.1
386,689 - GFF707 0.12 +0.4
386,689 - GFF707 0.12 +0.1
386,799 + GFF707 0.22 +0.6
386,800 - GFF707 0.23 +0.5
386,800 - GFF707 0.23 -0.6
386,850 + GFF707 0.27 -0.1
386,850 + GFF707 0.27 +0.4
386,850 + GFF707 0.27 -0.6
386,851 - GFF707 0.27 +0.5
386,880 + GFF707 0.30 +0.5
387,012 + GFF707 0.43 -1.8
387,012 + GFF707 0.43 +0.2
387,153 + GFF707 0.57 -0.9
387,153 + GFF707 0.57 -0.2
387,153 + GFF707 0.57 +0.8
387,153 + GFF707 0.57 -0.1
387,154 - GFF707 0.57 -0.2
387,154 - GFF707 0.57 +0.5
387,192 + GFF707 0.60 +0.0
387,192 + GFF707 0.60 +0.1
387,208 - GFF707 0.62 -0.0
387,384 + GFF707 0.79 +0.5
387,384 + GFF707 0.79 -0.3
387,384 + GFF707 0.79 -0.2
387,384 + GFF707 0.79 -0.4
387,385 - GFF707 0.79 -0.1
387,385 - GFF707 0.79 -0.3
387,498 + -0.3
387,498 + -0.4
387,499 - +0.1
387,499 - +1.0

Or see this region's nucleotide sequence